Sorbonne Université, CNRS, Integrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR), Roscoff, 29680, France.
Sorbonne Université, CNRS, UMR 7144 AD2M, Station Biologique de Roscoff (SBR), Roscoff, 29680, France.
Environ Microbiol. 2021 Mar;23(3):1638-1655. doi: 10.1111/1462-2920.15389. Epub 2021 Jan 28.
Kelps are dominant primary producers in temperate coastal ecosystems. Large amounts of kelp biomass can be exported to the seafloor during the algal growth cycle or following storms, creating new ecological niches for the associated microbiota. Here, we investigated the bacterial community associated with the kelp Laminaria hyperborea during its accumulation and degradation on the seafloor. Kelp tissue, seawater and sediment were sampled during a 6-month in situ experiment simulating kelp detritus accumulation. Evaluation of the epiphytic bacterial community abundance, structure, taxonomic composition and predicted functional profiles evidenced a biphasic succession. Initially, dominant genera (Hellea, Litorimonas, Granulosicoccus) showed a rapid and drastic decrease in sequence abundance, probably outcompeted by algal polysaccharide-degraders such as Bacteroidia members which responded within 4 weeks. Acidimicrobiia, especially members of the Sva0996 marine group, colonized the degrading kelp biomass after 11 weeks. These secondary colonizers could act as opportunistic scavenger bacteria assimilating substrates exposed by early degraders. In parallel, kelp accumulation modified bacterial communities in the underlying sediment, notably favouring anaerobic taxa potentially involved in the sulfur and nitrogen cycles. Overall, this study provides insights into the bacterial degradation of algal biomass in situ, an important link in coastal trophic chains.
海带是温带沿海生态系统中的主要初级生产者。在藻类生长周期或风暴后,大量的海带生物量可以被输出到海底,为相关微生物群落创造新的生态位。在这里,我们研究了与海带 Laminaria hyperborea 相关的细菌群落,这些细菌在海底的积累和降解过程中。在模拟海带碎屑积累的 6 个月原位实验中,我们对海带组织、海水和沉积物进行了采样。对附生细菌群落丰度、结构、分类组成和预测功能谱的评估表明存在两阶段演替。最初,优势属(Hellea、Litorimonas、Granulosicoccus)的序列丰度迅速而剧烈地下降,可能被藻类多糖降解菌(如在 4 周内响应的拟杆菌门成员)所竞争。酸微菌门,特别是海洋 Sva0996 菌群的成员,在 11 周后定植在降解的海带生物量上。这些二次定植者可能作为机会主义的清道夫细菌,同化早期降解者暴露的底物。与此同时,海带的积累改变了底层沉积物中的细菌群落,特别是有利于可能参与硫和氮循环的厌氧分类群。总的来说,这项研究提供了对原位藻类生物量细菌降解的深入了解,这是沿海食物链中的一个重要环节。