Liang Kaicheng, Liu Xinyu, Chen Si, Xie Jun, Qing Lee Wei, Liu Linbo, Kuan Lee Hwee
Bioinformatics Institute, Agency for Science, Technology and Research (ASTAR), Singapore.
Equal contribution.
Biomed Opt Express. 2020 Nov 19;11(12):7236-7252. doi: 10.1364/BOE.402847. eCollection 2020 Dec 1.
A resolution enhancement technique for optical coherence tomography (OCT), based on Generative Adversarial Networks (GANs), was developed and investigated. GANs have been previously used for resolution enhancement of photography and optical microscopy images. We have adapted and improved this technique for OCT image generation. Conditional GANs (cGANs) were trained on a novel set of ultrahigh resolution spectral domain OCT volumes, termed micro-OCT, as the high-resolution ground truth (∼1 m isotropic resolution). The ground truth was paired with a low-resolution image obtained by synthetically degrading resolution 4x in one of (1-D) or both axial and lateral axes (2-D). Cross-sectional image (B-scan) volumes obtained from imaging of human labial (lip) tissue and mouse skin were used in separate feasibility experiments. Accuracy of resolution enhancement compared to ground truth was quantified with human perceptual accuracy tests performed by an OCT expert. The GAN loss in the optimization objective, noise injection in both the generator and discriminator models, and multi-scale discrimination were found to be important for achieving realistic speckle appearance in the generated OCT images. The utility of high-resolution speckle recovery was illustrated by an example of micro-OCT imaging of blood vessels in lip tissue. Qualitative examples applying the models to image data from outside of the training data distribution, namely human retina and mouse bladder, were also demonstrated, suggesting potential for cross-domain transferability. This preliminary study suggests that deep learning generative models trained on OCT images from high-performance prototype systems may have potential in enhancing lower resolution data from mainstream/commercial systems, thereby bringing cutting-edge technology to the masses at low cost.
开发并研究了一种基于生成对抗网络(GAN)的光学相干断层扫描(OCT)分辨率增强技术。GAN此前已用于摄影和光学显微镜图像的分辨率增强。我们对该技术进行了调整和改进,以用于OCT图像生成。条件GAN(cGAN)在一组新的超高分辨率光谱域OCT体积(称为微型OCT)上进行训练,作为高分辨率的真实数据(各向同性分辨率约为1μm)。将真实数据与通过在轴向(1D)或轴向和横向(2D)之一中合成降低4倍分辨率而获得的低分辨率图像进行配对。从人类唇(嘴唇)组织和小鼠皮肤成像获得的横截面图像(B扫描)体积用于单独的可行性实验。由OCT专家进行的人类感知准确性测试对与真实数据相比的分辨率增强准确性进行了量化。发现优化目标中的GAN损失、生成器和判别器模型中的噪声注入以及多尺度判别对于在生成的OCT图像中实现逼真的散斑外观很重要。通过唇组织血管的微型OCT成像示例说明了高分辨率散斑恢复的效用。还展示了将模型应用于训练数据分布之外的图像数据(即人类视网膜和小鼠膀胱)的定性示例,表明具有跨域可转移性的潜力。这项初步研究表明,在高性能原型系统的OCT图像上训练的深度学习生成模型可能有潜力增强来自主流/商业系统的低分辨率数据,从而以低成本将前沿技术带给大众。