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标准遗传密码进化中的克里克摆动和超级摆动。

Crick Wobble and Superwobble in Standard Genetic Code Evolution.

机构信息

Department of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, 80309-0347, USA.

出版信息

J Mol Evol. 2021 Feb;89(1-2):50-61. doi: 10.1007/s00239-020-09985-7. Epub 2021 Jan 7.

Abstract

Wobble coding is inevitable during evolution of the Standard Genetic Code (SGC). It ultimately splits half of NN U/C/A/G coding boxes with different assignments. Further, it contributes to pervasive SGC order by reinforcing close spacing for identical SGC assignments. But wobble cannot appear too soon, or it will inhibit encoding and more decisively, obstruct evolution of full coding tables. However, these prior results assumed Crick wobble, NN U/C and NN A/G, read by a single adaptor RNA. Superwobble translates NN U/C/A/G codons, using one adaptor RNA with an unmodified 5' anticodon U (appropriate to earliest coding) in modern mitochondria, plastids, and mycoplasma. Assuming the SGC was selected when evolving codes most resembled it, characteristics of the critical selection events can be calculated. For example, continuous superwobble infrequently evolves SGC-like coding tables. So, continuous superwobble is a very improbable origin hypothesis. In contrast, late-arising superwobble shares late Crick wobble's frequent resemblance to SGC order. Thus late superwobble is possible, but yields SGC-like assignments less frequently than late Crick wobble. Ancient coding ambiguity, most simply, arose from Crick wobble alone. This is consistent with SGC assignments to NAN codons.

摘要

摇摆编码在标准遗传密码(SGC)的进化过程中是不可避免的。它最终将一半的 NN U/C/A/G 编码框分裂为不同的分配。此外,它通过为相同的 SGC 分配加强近距离间隔,有助于普遍的 SGC 顺序。但是,摇摆不能出现得太早,否则它会抑制编码,更果断地阻碍完整编码表的进化。然而,这些先前的结果假设克里克摇摆、NN U/C 和 NN A/G 由单个适应 RNA 读取。超摇摆使用一个带有未修饰的 5'反密码子 U(适合最早的编码)的单个适应 RNA 来翻译 NN U/C/A/G 密码子,这种适应 RNA 存在于现代线粒体、质体和支原体中。假设 SGC 是在进化代码最相似时被选择的,那么可以计算关键选择事件的特征。例如,连续的超摇摆很少进化出 SGC 样的编码表。因此,连续的超摇摆是一个非常不可能的起源假设。相比之下,后期出现的超摇摆与后期克里克摇摆的 SGC 顺序相似。因此,晚期超摇摆是可能的,但产生 SGC 样分配的频率低于晚期克里克摇摆。古老的编码模糊性,最简单的情况,仅由克里克摇摆引起。这与 SGC 对 NAN 密码子的分配一致。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f5b/7884361/ad2089efbe36/239_2020_9985_Fig1_HTML.jpg

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