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miR-26a-5p 作为儿科血液系统恶性肿瘤血浆外泌体 miRNA qRT-PCR 水平归一化的参照。

MiR-26a-5p as a Reference to Normalize MicroRNA qRT-PCR Levels in Plasma Exosomes of Pediatric Hematological Malignancies.

机构信息

Maternal and Child Health Department, Padova University, 35128 Padova, Italy.

Istituto di Ricerca Pediatrica Città della Speranza, 35127 Padova, Italy.

出版信息

Cells. 2021 Jan 8;10(1):101. doi: 10.3390/cells10010101.

Abstract

Plasma exosomal microRNAs (miRNAs) are considered as valid circulating biomarkers for cancer diagnosis and prognosis. Quantitative real-time polymerase chain reaction (qRT-PCR), the most commonly used technique to assess circulating miRNA levels, requires a normalization step involving uniformly expressed endogenous miRNAs. However, there is still no consensus on reference miRNAs for plasma exosomal miRNA abundance normalization. In this study, we identified a panel of miRNAs with stable abundance by analyzing public plasma exosome RNA-seq data and selected miR-486-5p, miR-26a-5p, miR-423-5p and miR191-5p as candidate normalizers. Next, we tested the abundance variation of these miRNAs by qRT-PCR in plasma exosomes of healthy donors and pediatric patients with anaplastic large cell lymphoma, Burkitt lymphoma, Hodgkin lymphoma and mature B-cell acute lymphoblastic leukemia. MiR-486-5p and miR-26a-5p showed the most stable levels, both between healthy controls and patients and among the malignancies analyzed. In light of previous reports on miRNA stability in different exosome isolation methods, our data indicated that miR-26a-5p is a bona fide reference miRNA for qRT-PCR normalization to evaluate miRNA abundance from circulating plasma exosomes in studies of hematological malignancies.

摘要

血浆外泌体 microRNAs(miRNAs)被认为是癌症诊断和预后的有效循环生物标志物。实时定量聚合酶链反应(qRT-PCR)是评估循环 miRNA 水平最常用的技术,需要进行标准化步骤,涉及均匀表达的内源性 miRNAs。然而,目前对于血浆外泌体 miRNA 丰度的标准化参考 miRNA 仍没有共识。在这项研究中,我们通过分析公共血浆外泌体 RNA-seq 数据来确定一组具有稳定丰度的 miRNAs,并选择 miR-486-5p、miR-26a-5p、miR-423-5p 和 miR191-5p 作为候选标准化物质。接下来,我们通过 qRT-PCR 检测了健康供体和患有间变大细胞淋巴瘤、伯基特淋巴瘤、霍奇金淋巴瘤和成熟 B 细胞急性淋巴细胞白血病的儿科患者血浆外泌体中这些 miRNA 的丰度变化。miR-486-5p 和 miR-26a-5p 表现出最稳定的水平,无论是在健康对照组和患者之间,还是在所分析的恶性肿瘤之间。根据先前关于不同外泌体分离方法中 miRNA 稳定性的报告,我们的数据表明,miR-26a-5p 是 qRT-PCR 标准化的可靠参考 miRNA,用于评估血液恶性肿瘤研究中循环血浆外泌体中 miRNA 的丰度。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3644/7827902/15c816b1a99a/cells-10-00101-g001.jpg

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