State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Open Laboratory of Applied Microbiology, Guangdong Microbial Culture Collection Center (GDMCC), Guangdong Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, PR China.
Int J Syst Evol Microbiol. 2021 Feb;71(2). doi: 10.1099/ijsem.0.004634.
A novel Gram-stain-negative, facultatively anaerobic, rod-shaped and non-motile bacterial strain, designated as 4C16A, was isolated from a tidal flat sediment and characterized by using a polyphasic taxonomic approach. Strain 4C16A was found to grow at 10-40 °C (optimum, 28 °C), at pH 5.0-10.0 (optimum, pH 6.0-7.0) and in 0-6 % (w/v) NaCl (optimum, 1 %). Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain 4C16A fell into the genus , and shared the highest identity of 98.9 % with the closest type strain KACC 13772 and less than 98.0 % identity with other type strains of recognized species within this genus. The phylogenomic analysis indicated that strain 4C16A formed an independent branch within this genus. The 28.6 % digital DNA-DNA hybridization estimate and 85.0 % average nucleotide identity between strains 4C16A and KACC 13772 were the highest, but still far below their respective threshold for species definition, implying that strain 4C16A should represent a novel genospecies. The predominant cellular fatty acid was summed feature 8; the polar lipids were diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and phosphatidylmonomethylethanolamine; the respiratory quinones were Q-9 and Q-10. The genomic DNA G+C content was 59.8mol %. Based on phylogenetic analyses and phenotypic and chemotaxonomic characteristics, strain 4C16A is concluded to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain of the species is 4C16A (=GDMCC 1.1932=KACC 22078). We also propose the reclassification of as comb. nov. and '' as sp. nov.
一株新的革兰氏阴性、兼性厌氧、杆状、非运动的细菌菌株,被命名为 4C16A,从潮滩沉积物中分离出来,并通过多相分类学方法进行了特征描述。菌株 4C16A 被发现可以在 10-40°C(最佳温度为 28°C)、pH 值 5.0-10.0(最佳 pH 值为 6.0-7.0)和 0-6%(w/v)NaCl(最佳浓度为 1%)下生长。基于 16S rRNA 基因序列的系统发育分析表明,菌株 4C16A 属于 属,与最接近的模式菌株 KACC 13772 的同源性最高,为 98.9%,与该属内其他公认种的模式菌株的同源性低于 98.0%。系统基因组分析表明,菌株 4C16A 在该属内形成一个独立的分支。菌株 4C16A 和 KACC 13772 之间的 28.6%数字 DNA-DNA 杂交估计值和 85.0%平均核苷酸同一性是最高的,但仍远低于各自的种定义阈值,这表明菌株 4C16A 应代表一个新的种。主要的细胞脂肪酸是总和特征 8;极性脂是双磷脂酰甘油、磷脂酰胆碱、磷脂酰乙醇胺、磷脂酰甘油和磷脂酰单甲乙醇胺;呼吸醌是 Q-9 和 Q-10。基因组 DNA G+C 含量为 59.8mol%。基于系统发育分析以及表型和化学分类特征,菌株 4C16A 被认为代表了 属的一个新种,建议将其命名为 sp. nov.。该种的模式菌株为 4C16A(=GDMCC 1.1932=KACC 22078)。我们还建议将 重新分类为 comb. nov.和 '' 重新分类为 sp. nov.。