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piggyBac 转座酶的 C 端结构域不参与 DNA 转座。

The C-terminal Domain of piggyBac Transposase Is Not Required for DNA Transposition.

机构信息

PRC, UMR INRAE 0085, CNRS 7247, Centre INRAE Val de Loire, 37380 Nouzilly, France.

Biological Sciences Department, California State Polytechnic University, Pomona, CA 91768, USA.

出版信息

J Mol Biol. 2021 Apr 2;433(7):166805. doi: 10.1016/j.jmb.2020.166805. Epub 2021 Jan 13.

Abstract

PiggyBac(PB)-like elements (pble) are members of a eukaryotic DNA transposon family. This family is of interest to evolutionary genomics because pble transposases have been domesticated at least 9 times in vertebrates. The amino acid sequence of pble transposases can be split into three regions: an acidic N-terminal domain (100 aa), a central domain (400 aa) containing a DD[D/E] catalytic triad, and a cysteine-rich domain (CRD; ~90 aa). Two recent reports suggested that a functional CRD is required for pble transposase activity. Here we found that two CRD-deficient pble transposases, a PB variant and an isoform encoded by the domesticated PB-derived vertebrate transposase gene 5 (pgbd5) trigger transposition of the Ifp2 pble. When overexpressed in HeLa cells, these CRD-deficient transposases can insert Ifp2 elements with proper and improper transposon ends, associated with deleterious effects on cells. Finally, we found that mouse CRD-deficient transposase Pgbd5, as well as PB, do not insert pbles at random into chromosomes. Transposition events occurred more often in genic regions, in the neighbourhood of the transcription start sites and were often found in genes predominantly expressed in the human central nervous system.

摘要

PiggyBac(PB)-样元件 (pble) 是真核 DNA 转座子家族的成员。该家族引起了进化基因组学的关注,因为 pble 转座酶在脊椎动物中至少被驯化了 9 次。pble 转座酶的氨基酸序列可分为三个区域:酸性 N 端结构域 (100 aa)、含有 DD[D/E]催化三联体的中央结构域 (400 aa) 和富含半胱氨酸的结构域 (CRD; ~90 aa)。最近的两项研究报告表明,功能性 CRD 是 pble 转座酶活性所必需的。在这里,我们发现两个 CRD 缺失的 pble 转座酶,即 PB 变体和由驯化的 PB 衍生的脊椎动物转座酶基因 5 (pgbd5) 编码的同工型,触发了 Ifp2 pble 的转座。当在 HeLa 细胞中过表达时,这些 CRD 缺失的转座酶可以插入 Ifp2 元件,具有适当和不适当的转座子末端,对细胞造成有害影响。最后,我们发现小鼠 CRD 缺失的转座酶 Pgbd5 以及 PB 并不能随机将 pble 插入染色体。转座事件更频繁地发生在基因区域,靠近转录起始位点,并且经常在主要在人类中枢神经系统中表达的基因中发现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a63b/8426422/99623c80c326/nihms-1730013-f0001.jpg

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