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[物种名称]的完整叶绿体基因组序列,以及与其他[物种名称]的比较分析。

The complete chloroplast genome sequence of , and a comparative analysis with other species.

作者信息

Sun Chong, Gong Xia, Liu Xia

机构信息

College of Landscape Architecture and Life Science, Chongqing University of Arts and Sciences, Chongqing, China.

Sichuan Academy of Botanical Engineering, Sichuan, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jun 16;5(3):2463-2465. doi: 10.1080/23802359.2020.1775519.

DOI:10.1080/23802359.2020.1775519
PMID:33457828
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7782018/
Abstract

, which is an endemic of the Himilayas and adjacent regions, is the species that occupy the highest habitat in the genus. The complete chloroplast genome sequence of was characterized from Illumina pair-end sequencing. The chloroplast genome of was 155,212 bp in length, containing a large single-copy region (LSC) of 84,545 bp, a small single-copy region (SSC) of 16,859 bp, and two inverted repeat (IR) regions of 26,904 bp. The overall GC content is 36.80%, while the correponding values of the LSC, SSC, and IR regions are 34.5%, 30.5%, and 42.3%, respectively. The genome contains 131 complete genes, including 86 protein-coding genes (62 protein-coding gene species), 37 tRNA genes (29 tRNA species) and 8 rRNA genes (4 rRNA species). The Neighbour-joining phylogenetic analysis showed that and clustered together as sisters to other species.

摘要

它是喜马拉雅山脉及周边地区的特有物种,是该属中占据最高栖息地的物种。通过Illumina双末端测序对其完整叶绿体基因组序列进行了表征。该物种的叶绿体基因组长度为155,212 bp,包含一个84,545 bp的大单拷贝区域(LSC)、一个16,859 bp的小单拷贝区域(SSC)和两个26,904 bp的反向重复(IR)区域。总体GC含量为36.80%,而LSC、SSC和IR区域的相应值分别为34.5%、30.5%和42.3%。该基因组包含131个完整基因,包括86个蛋白质编码基因(62种蛋白质编码基因)、37个tRNA基因(29种tRNA)和8个rRNA基因(4种rRNA)。邻接法系统发育分析表明,该物种与其他某物种聚集在一起,形成姐妹关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d8a/7782018/7c0f4e6d8779/TMDN_A_1775519_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d8a/7782018/7c0f4e6d8779/TMDN_A_1775519_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0d8a/7782018/7c0f4e6d8779/TMDN_A_1775519_F0001_C.jpg

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