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中国大鲵线粒体全基因组:基因组特征与系统发育分析

Complete mitochondrial genome of Chinese salamander : genome characterization and phylogenetic analysis.

作者信息

Hou Feixia, Wang Shasha, Cao Jing, Peng Cheng, Guo Jinlin

机构信息

Pharmacy College, Chengdu University of Traditional Chinese Medicine; The Ministry of Education Key Laboratory of Standardization of Chinese Herbal Medicine, Key Laboratory of Systematic Research, Development and Utilization of Chinese Medicine Resources in Sichuan Province - Key Laboratory Breeding Base of Co-founded by Sichuan Province and MOST, Chengdu, China.

出版信息

Mitochondrial DNA B Resour. 2016 Oct 18;1(1):761-762. doi: 10.1080/23802359.2016.1229591.

Abstract

The complete mitogenome sequence of (Caudata: Hynobiidae) has been amplified and sequenced in this study. The overall base composition of mitogenome is 33.9% for A, 19.7% for C, 13.6% for G, and 32.8% for T and has low GC content of 33.3%. The assembled mitogenome, consisting of 16,381 bp, has 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and 1 D-loop region. All PCGs, except for gene, were encoded on H-strand. Phylogenetic analysis with the whole mitogenome sequences revealed a close relationship of with .

摘要

在本研究中,已扩增并测序了(有尾目:隐鳃鲵科)的完整线粒体基因组序列。该线粒体基因组的总体碱基组成为:A占33.9%,C占19.7%,G占13.6%,T占32.8%,GC含量低,为33.3%。组装后的线粒体基因组由16381个碱基对组成,有13个蛋白质编码基因(PCGs)、22个tRNA基因、2个rRNA基因和1个D环区域。除基因外,所有PCGs均在重链上编码。基于完整线粒体基因组序列的系统发育分析表明,与具有密切关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c418/7800445/6cebdef7c49f/TMDN_A_1229591_F0001_B.jpg

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