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(禾本科)的完整叶绿体基因组序列。

The complete chloroplast genome sequence of (Poaceae).

作者信息

Liu Fang, Zhao Yan, Luo Dengjie, Hong Dengwei, Li Rongbai

机构信息

State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Agricultural College, Guangxi University, Nanning, China.

出版信息

Mitochondrial DNA B Resour. 2017 Jul 28;2(2):465-466. doi: 10.1080/23802359.2017.1357452.

Abstract

The complete chloroplast genome sequence of (GenBank accession number: KX085496) was generated by de novo assembly with low-coverage whole-genome sequence data. The chloroplast genome is 134,821 bp in length and showed conserved typical chloroplast structure. The cpDNA contained four rRNA, 39 tRNA, and 79 unique protein-coding genes. Seventeen genes contain one intron, only contains two introns; is trans-spliced, one of its exons is in the LSC region (5'_end) and the two reside in the IR regions (3'_end) separated. A pair of gene due to the 5' part of which overlaps the IR/SSC junctions, was two unique genes. The AT content of cp genome is 61%. Phylogenomic analysis showed that is closely related to . The complete cpDNA of provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis for the genus .

摘要

通过对低覆盖度全基因组序列数据进行从头组装,获得了(GenBank登录号:KX085496)的完整叶绿体基因组序列。叶绿体基因组长度为134,821 bp,呈现出保守的典型叶绿体结构。叶绿体DNA包含4个rRNA、39个tRNA和79个独特的蛋白质编码基因。17个基因含有1个内含子,只有 含有2个内含子; 是反式剪接的,其一个外显子位于LSC区域(5'端),另外两个位于分开的IR区域(3'端)。由于 的5'部分与IR/SSC连接点重叠,一对基因 是两个独特的基因。 叶绿体基因组的AT含量为61%。系统基因组分析表明 与 密切相关。 的完整叶绿体DNA为该属进一步的系统发育和进化分析提供了重要的DNA分子数据。

需注意,原文中部分内容缺失具体物种名,翻译时保留了原文格式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f88/7800631/f3fc691ea6b5/TMDN_A_1357452_F0001_C.jpg

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