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.的完整叶绿体基因组

The complete chloroplast genome of .

作者信息

Liu Hai-Ying, Li Juan, Xie Deng-Feng, He Xing-Jin, Yu Yan, Zhou Song-Dong

机构信息

Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, P.R.China.

出版信息

Mitochondrial DNA B Resour. 2018 Jan 9;3(1):103-104. doi: 10.1080/23802359.2018.1424581.

DOI:10.1080/23802359.2018.1424581
PMID:33474083
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7799488/
Abstract

Franchet (Liliaceae) is an endangered species naturally distributed in China. The complete chloroplast genome sequence of was generated by de novo assembly using whole genome next generation sequencing data. The chloroplast genome of was 152,718 bp in length and divided into four distinct regions, such as large single copy region (82,154 bp), small single copy region (17,524 bp) and a pair of inverted repeat regions (26,520 bp). The genome annotation predicted a total of 112 genes, including 78 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that is nested in and has close relationship to and .

摘要

太白贝母(百合科)是一种自然分布于中国的濒危物种。利用全基因组二代测序数据通过从头组装生成了其完整的叶绿体基因组序列。太白贝母的叶绿体基因组长度为152,718 bp,分为四个不同区域,即大单拷贝区域(82,154 bp)、小单拷贝区域(17,524 bp)和一对反向重复区域(26,520 bp)。基因组注释共预测出112个基因,包括78个蛋白质编码基因、30个tRNA基因和4个rRNA基因。与已报道的叶绿体基因组进行系统发育分析表明,太白贝母嵌套于 [此处原文缺失相关物种名称] 中,并且与 [此处原文缺失相关物种名称] 和 [此处原文缺失相关物种名称] 关系密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6585/7799488/023deec77928/TMDN_A_1424581_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6585/7799488/023deec77928/TMDN_A_1424581_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6585/7799488/023deec77928/TMDN_A_1424581_F0001_B.jpg

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本文引用的文献

1
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.MEGA7:适用于更大数据集的分子进化遗传学分析版本7.0
Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.
2
Evolutionary events in Lilium (including Nomocharis, Liliaceae) are temporally correlated with orogenies of the Q-T plateau and the Hengduan Mountains.百合属(包括 nomocharis)的进化事件与青藏高原和横断山脉的造山运动在时间上是相关的。
Mol Phylogenet Evol. 2013 Sep;68(3):443-60. doi: 10.1016/j.ympev.2013.04.026. Epub 2013 May 9.
3
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.
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4
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SOAPdenovo2:一种经验丰富的、内存效率高的短读长从头组装器。
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
4
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.Geneious Basic:一个集成和可扩展的桌面软件平台,用于组织和分析序列数据。
Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.
5
Using Tablet for visual exploration of second-generation sequencing data.使用平板电脑探索第二代测序数据。
Brief Bioinform. 2013 Mar;14(2):193-202. doi: 10.1093/bib/bbs012. Epub 2012 Mar 24.
6
Fast gapped-read alignment with Bowtie 2.快速缺口读对准与 Bowtie 2。
Nat Methods. 2012 Mar 4;9(4):357-9. doi: 10.1038/nmeth.1923.
7
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.trimal:一种用于大规模系统发育分析中自动对齐修剪的工具。
Bioinformatics. 2009 Aug 1;25(15):1972-3. doi: 10.1093/bioinformatics/btp348. Epub 2009 Jun 8.
8
Molecular phylogenetic evidence for the monophyly of Fritillaria and Lilium (Liliaceae; Liliales) and the infrageneric classification of Fritillaria.贝母属和百合属(百合科;百合目)单系性的分子系统发育证据及贝母属的属下分类
Mol Phylogenet Evol. 2005 Jun;35(3):509-27. doi: 10.1016/j.ympev.2004.12.023. Epub 2005 Mar 23.
9
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.MAFFT:一种基于快速傅里叶变换的快速多序列比对新方法。
Nucleic Acids Res. 2002 Jul 15;30(14):3059-66. doi: 10.1093/nar/gkf436.