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(桑寄生科)的完整叶绿体基因组序列:中国南方的一种半寄生灌木。

Complete chloroplast genome sequence of (Loranthaceae): a hemiparasitic shrub in South China.

作者信息

Yuan Lang-Xing, Wang Jian-Hua, Chen Chao-Rui, Zhao Kun-Kun, Zhu Zhi-Xin, Wang Hua-Feng

机构信息

Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, Institute of Tropical Agriculture and Forestry Hainan University, Haikou, China.

出版信息

Mitochondrial DNA B Resour. 2018 May 11;3(2):580-581. doi: 10.1080/23802359.2018.1471366.

Abstract

(Loranthaceae) is a hemiparasitic shrub distributed in forest margins of Southeast Asian countries. Here, we report and characterize the complete plastid genome sequence of in an effort to provide genomic resources useful for the phylogenetic studies for Santalales. The complete plastome is 123,810 bp in length and contains the typical structure and gene content of angiosperm plastomes, including two inverted repeat (IR) regions of 23,101 bp, a large single copy (LSC) region of 71,448 bp and a small single copy (SSC) region of 6160 bp. The plastome contains 88 genes, consisting of 61 unique protein-coding genes, 23 unique tRNA genes and four unique rRNA genes. The overall A/T content in the plastome of is 62.7%. Phylogenetic analyses were performed using the entire plastome, including spacers, introns, etc. and we recovered that and was closely related. The complete plastome sequence of will provide a useful resource for the phylogenetic studies for Santalales.

摘要

桑寄生科是一种半寄生灌木,分布于东南亚国家的林缘。在此,我们报道并描述了[物种名称]的完整质体基因组序列,旨在为檀香目系统发育研究提供有用的基因组资源。完整的质体基因组长度为123,810 bp,具有被子植物质体基因组的典型结构和基因组成,包括两个23,101 bp的反向重复(IR)区域、一个71,448 bp的大单拷贝(LSC)区域和一个6160 bp的小单拷贝(SSC)区域。该质体基因组包含88个基因,由61个独特的蛋白质编码基因、23个独特的tRNA基因和4个独特的rRNA基因组成。[物种名称]质体基因组的总体A/T含量为62.7%。使用包括间隔区、内含子等在内的整个质体基因组进行系统发育分析,我们发现[物种名称]与[另一物种名称]关系密切。[物种名称]的完整质体基因组序列将为檀香目系统发育研究提供有用的资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/369e/7799537/d87af8597d37/TMDN_A_1471366_F0001_B.jpg

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