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(红藻门)的完整质体基因组及系统发育分析

The complete plastid genome of (Rhodophyta) and phylogenetic analysis.

作者信息

Zhang Jing, Tang Xianming, Zhou Chen Wei, Liu Tao, Li Yue

机构信息

Qilu University of Technology (Shandong Academy of Sciences), Jinan, People's Republic of China.

Hainan Academy of Ocean and Fisheries Sciences, Haikou, People's Republic of China.

出版信息

Mitochondrial DNA B Resour. 2018 Oct 30;3(2):1172-1173. doi: 10.1080/23802359.2018.1524279.

DOI:10.1080/23802359.2018.1524279
PMID:33474454
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7800207/
Abstract

In this study, we obtained the complete plastid genome of (Lamouroux) C. Agardh using the high-throughput sequencing method. It had circular mapping organization with the length of 195,990 bp and contained 265 genes including 195 protein-coding genes, three rRNA genes, one tmRNA gene, 28 tRNA genes and 38 unidentified open reading frames (ORFs). Moreover, phylogenetic analysis revealed that firstly clustered with The complete plastid genome obtained in this work would be useful for further understanding the evolution of .

摘要

在本研究中,我们采用高通量测序方法获得了(拉穆鲁)C. 阿加德的完整质体基因组。它具有环状图谱结构,长度为195,990 bp,包含265个基因,其中包括195个蛋白质编码基因、3个rRNA基因、1个tmRNA基因、28个tRNA基因和38个未鉴定的开放阅读框(ORF)。此外,系统发育分析表明, 首先与 聚类。本研究获得的完整质体基因组将有助于进一步了解 的进化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e5f9/7800207/761b3261ac1e/TMDN_A_1524279_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e5f9/7800207/761b3261ac1e/TMDN_A_1524279_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e5f9/7800207/761b3261ac1e/TMDN_A_1524279_F0001_B.jpg

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本文引用的文献

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Degradation of Polysaccharides from Grateloupia filicina and Their Antiviral Activity to Avian Leucosis Virus Subgroup J.石花菜多糖的降解及其对 J 亚群禽白血病病毒的抗病毒活性。
Mar Drugs. 2017 Nov 3;15(11):345. doi: 10.3390/md15110345.
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NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
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Antiangiogenic effects of GFP08, an agaran-type polysaccharide isolated from Grateloupia filicina.
GFP08,一种从石花菜中分离得到的琼胶型多糖,具有抗血管生成作用。
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