Department of Biochemistry and Microbiology, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand.
Int J Syst Evol Microbiol. 2021 Feb;71(2). doi: 10.1099/ijsem.0.004635.
A Gram-stain-positive, catalase-negative, rod-shaped, non-motile, non-spore-forming, and facultatively anaerobic strain CRM56-3, isolated from fermented tea leaves collected from Chiang Rai province, Thailand, was characterized based on a polyphasic approach. The strain produced dl-lactic acid heterofermentatively from glucose. It grew at 15-42 °C (optimum at 30 °C), pH 3.5-8.0 (optimum pH 6.0) and in 1-4 % (w/v) NaCl. Strain CRM56-3 contained C, C cyclo 8, and C 7, and/or C 6c as major cellular fatty acids. Based on 16S rRNA gene sequence analysis, strain CRM56-3 belongs to the genus and was closely related to DSM 19909 (99.2 %), JCM 1123 (98.9 %), and DSM 15502 (98.7 %). The draft genome of strain CRM56-3 contained 2681617 bp with 2413 coding sequences and DNA G+C content determined from genome sequence of 44.5 mol%. The digital DNA-DNA hybridization (dDDH) between strain CRM56-3 and DSM 19909, JCM 1123, and DSM 15502 were 19.5, 20.4, and 21.6 %, respectively. The average nucleotide identity (ANIm) and the average amino acid identity (AAI) between strain CRM56-3 and closely related strains were lower than 85.0 and 80.0 %, respectively. The strain CRM56-3 was clearly distinguished from related species by its phenotypic and chemotaxonomic characteristics, 16S rRNA gene sequence similarity, and the draft genome analysis. Therefore, the strain represents a novel species of the genus for which the name of sp. nov. is proposed. The type strain is CRM56-3 (=JCM 34223=LMG 31663=TISTR 2851).
从泰国清莱省采集的发酵茶叶中分离到一株革兰氏阳性、过氧化氢酶阴性、杆状、非运动、非孢子形成、兼性厌氧的菌株 CRM56-3,通过多相研究对其进行了表征。该菌株能够从葡萄糖异发酵生产 dl-乳酸。它在 15-42°C(最佳温度 30°C)、pH3.5-8.0(最佳 pH6.0)和 1-4%(w/v)NaCl 下生长。菌株 CRM56-3 含有 C、C 环 8 和 C 7,和/或 C 6c 作为主要的细胞脂肪酸。根据 16S rRNA 基因序列分析,菌株 CRM56-3 属于 属,与 DSM 19909(99.2%)、JCM 1123(98.9%)和 DSM 15502(98.7%)最为密切相关。菌株 CRM56-3 的基因组草图包含 2681617 bp,有 2413 个编码序列,基因组序列的 DNA G+C 含量为 44.5mol%。菌株 CRM56-3 与 DSM 19909、JCM 1123 和 DSM 15502 的数字 DNA-DNA 杂交(dDDH)分别为 19.5%、20.4%和 21.6%。菌株 CRM56-3 与密切相关菌株的平均核苷酸同一性(ANIm)和平均氨基酸同一性(AAI)均低于 85.0%和 80.0%。该菌株在表型和化学分类特征、16S rRNA 基因序列相似性以及基因组分析方面与相关 种明显不同。因此,该菌株代表了 属的一个新种,建议将其命名为 sp. nov.。模式菌株为 CRM56-3(=JCM 34223=LMG 31663=TISTR 2851)。