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分子的强烈苦味:用于加速药物发现的机器学习

Intense bitterness of molecules: Machine learning for expediting drug discovery.

作者信息

Margulis Eitan, Dagan-Wiener Ayana, Ives Robert S, Jaffari Sara, Siems Karsten, Niv Masha Y

机构信息

The Institute of Biochemistry, Food Science and Nutrition, The Robert H Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel.

Comparative & Translational Sciences, GlaxoSmithKline, Gunnels Wood Road, Stevenage SG1 2NY, United Kingdom.

出版信息

Comput Struct Biotechnol J. 2020 Dec 25;19:568-576. doi: 10.1016/j.csbj.2020.12.030. eCollection 2021.

Abstract

Drug development is a long, expensive and multistage process geared to achieving safe drugs with high efficacy. A crucial prerequisite for completing the medication regimen for oral drugs, particularly for pediatric and geriatric populations, is achieving taste that does not hinder compliance. Currently, the aversive taste of drugs is tested in late stages of clinical trials. This can result in the need to reformulate, potentially resulting in the use of more animals for additional toxicity trials, increased financial costs and a delay in release to the market. Here we present BitterIntense, a machine learning tool that classifies molecules into "very bitter" or "not very bitter", based on their chemical structure. The model, trained on chemically diverse compounds, has above 80% accuracy on several test sets. Our results suggest that about 25% of drugs are predicted to be very bitter, with even higher prevalence (~40%) in COVID19 drug candidates and in microbial natural products. Only ~10% of toxic molecules are predicted to be intensely bitter, and it is also suggested that intense bitterness does not correlate with hepatotoxicity of drugs. However, very bitter compounds may be more cardiotoxic than not very bitter compounds, possessing significantly lower QPlogHERG values. BitterIntense allows quick and easy prediction of strong bitterness of compounds of interest for food, pharma and biotechnology industries. We estimate that implementation of BitterIntense or similar tools early in drug discovery process may lead to reduction in delays, in animal use and in overall financial burden.

摘要

药物研发是一个漫长、昂贵且多阶段的过程,旨在开发出安全且高效的药物。完成口服药物治疗方案的一个关键前提,尤其是针对儿童和老年人群体,是要实现不会妨碍依从性的口味。目前,药物的不良味道是在临床试验后期进行测试的。这可能导致需要重新配方,进而可能需要使用更多动物进行额外的毒性试验,增加财务成本并延迟上市。在此,我们展示了BitterIntense,这是一种机器学习工具,可根据分子的化学结构将其分类为“非常苦”或“不太苦”。该模型基于化学结构多样的化合物进行训练,在几个测试集上的准确率超过80%。我们的结果表明,约25%的药物预计非常苦,在新冠病毒候选药物和微生物天然产物中的比例甚至更高(约40%)。预计只有约10%的有毒分子非常苦,并且还表明强烈的苦味与药物的肝毒性无关。然而,非常苦的化合物可能比不太苦的化合物更具心脏毒性,其QPlogHERG值显著更低。BitterIntense可为食品、制药和生物技术行业快速轻松地预测感兴趣化合物的强烈苦味。我们估计,在药物发现过程早期实施BitterIntense或类似工具可能会减少延迟、减少动物使用并减轻总体财务负担。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bf8/7807207/f34f53c43b50/ga1.jpg

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