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本文引用的文献

1
Wolpert's French Flag: what's the problem?沃尔珀特氏法国国旗征:问题出在哪里?
Development. 2019 Dec 20;146(24):dev185967. doi: 10.1242/dev.185967.
2
Unravelling cellular relationships during development and regeneration using genetic lineage tracing.利用遗传谱系追踪技术揭示发育和再生过程中的细胞关系。
Nat Rev Mol Cell Biol. 2019 Dec;20(12):753-765. doi: 10.1038/s41580-019-0186-3. Epub 2019 Nov 5.
3
Estimating information in time-varying signals.估计时变信号中的信息。
PLoS Comput Biol. 2019 Sep 3;15(9):e1007290. doi: 10.1371/journal.pcbi.1007290. eCollection 2019 Sep.
4
Rapid changes in morphogen concentration control self-organized patterning in human embryonic stem cells.形态发生素浓度的快速变化控制着人类胚胎干细胞的自我组织模式。
Elife. 2019 Mar 4;8:e40526. doi: 10.7554/eLife.40526.
5
Optimal Decoding of Cellular Identities in a Genetic Network.遗传网络中细胞身份的最佳解码。
Cell. 2019 Feb 7;176(4):844-855.e15. doi: 10.1016/j.cell.2019.01.007. Epub 2019 Jan 31.
6
Diverse Spatial Expression Patterns Emerge from Unified Kinetics of Transcriptional Bursting.转录爆发的统一动力学产生多样化的空间表达模式。
Cell. 2018 Oct 18;175(3):835-847.e25. doi: 10.1016/j.cell.2018.09.056.
7
Distributed and dynamic intracellular organization of extracellular information.细胞外信息的分布式和动态细胞内组织。
Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):6088-6093. doi: 10.1073/pnas.1716659115. Epub 2018 May 21.
8
Transcriptional precision and accuracy in development: from measurements to models and mechanisms.发育过程中的转录精确性与准确性:从测量到模型及机制
Development. 2017 Nov 1;144(21):3855-3866. doi: 10.1242/dev.146563.
9
Synthesizing developmental trajectories.合成发育轨迹。
PLoS Comput Biol. 2017 Sep 18;13(9):e1005742. doi: 10.1371/journal.pcbi.1005742. eCollection 2017 Sep.
10
Decoding of position in the developing neural tube from antiparallel morphogen gradients.从反平行形态发生素梯度解析发育中神经管的位置
Science. 2017 Jun 30;356(6345):1379-1383. doi: 10.1126/science.aam5887.

众多的位置信息位。

The many bits of positional information.

机构信息

Institute of Science and Technology Austria, Am Campus 1, AT-3400 Klosterneuburg, Austria.

Joseph Henry Laboratories of Physics and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA

出版信息

Development. 2021 Feb 1;148(2):dev176065. doi: 10.1242/dev.176065.

DOI:10.1242/dev.176065
PMID:33526425
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7875500/
Abstract

Half a century after Lewis Wolpert's seminal conceptual advance on how cellular fates distribute in space, we provide a brief historical perspective on how the concept of positional information emerged and influenced the field of developmental biology and beyond. We focus on a modern interpretation of this concept in terms of information theory, largely centered on its application to cell specification in the early embryo. We argue that a true physical variable (position) is encoded in local concentrations of patterning molecules, that this mapping is stochastic, and that the processes by which positions and corresponding cell fates are determined based on these concentrations need to take such stochasticity into account. With this approach, we shift the focus from biological mechanisms, molecules, genes and pathways to quantitative systems-level questions: where does positional information reside, how it is transformed and accessed during development, and what fundamental limits it is subject to?

摘要

半个世纪前,刘易斯·沃尔珀特(Lewis Wolpert)在细胞命运如何在空间中分配方面取得了开创性的概念性进展,我们提供了一个简短的历史视角,介绍了位置信息的概念是如何出现并影响发育生物学及其他领域的。我们专注于从信息论的角度对这一概念进行现代诠释,主要集中在其在早期胚胎中对细胞特化的应用上。我们认为,一个真正的物理变量(位置)被编码在模式分子的局部浓度中,这种映射是随机的,并且基于这些浓度确定位置和相应细胞命运的过程需要考虑到这种随机性。通过这种方法,我们将重点从生物学机制、分子、基因和途径转移到定量的系统水平问题上:位置信息驻留在何处,它在发育过程中是如何转化和访问的,以及它受到哪些基本限制?