McGough Lauren, Casademunt Helena, Nikolić Miloš, Aridor Zoe, Petkova Mariela D, Gregor Thomas, Bialek William
Joseph Henry Laboratories of Physics and Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton NJ 08544 USA.
Department of Ecology and Evolution, The University of Chicago, Chicago IL 60637.
PRX Life. 2024 Jan-Mar;2(1). doi: 10.1103/prxlife.2.013016. Epub 2024 Mar 26.
In a developing embryo, information about the position of cells is encoded in the concentrations of morphogen molecules. In the fruit fly, the local concentrations of just a handful of proteins encoded by the gap genes are sufficient to specify position with a precision comparable to the spacing between cells along the anterior-posterior axis. This matches the precision of downstream events such as the striped patterns of expression in the pair-rule genes, but is not quite sufficient to define unique identities for individual cells. We demonstrate theoretically that this information gap can be bridged if positional errors are spatially correlated, with correlation lengths ~ 20% of the embryo length. We then show experimentally that these correlations are present, with the required strength, in the fluctuating positions of the pair-rule stripes, and this can be traced back to the gap genes. Taking account of these correlations, the available information matches the information needed for unique cellular specification, within error bars of ~ 2%. These observation support a precisionist view of information flow through the underlying genetic networks, in which accurate signals are available from the start and preserved as they are transformed into the final spatial patterns.
在发育中的胚胎里,有关细胞位置的信息是由形态发生素分子的浓度编码的。在果蝇中,由间隙基因编码的少数几种蛋白质的局部浓度就足以精确指定位置,其精度与沿前后轴的细胞间距相当。这与下游事件(如成对规则基因中的条纹状表达模式)的精度相匹配,但还不足以定义单个细胞的独特身份。我们从理论上证明,如果位置误差在空间上相关,相关长度约为胚胎长度的20%,那么这个信息缺口就可以被弥合。然后我们通过实验表明,在成对规则条纹的波动位置中存在这些具有所需强度的相关性,并且这可以追溯到间隙基因。考虑到这些相关性,在约2%的误差范围内,可用信息与唯一细胞指定所需的信息相匹配。这些观察结果支持了一种关于信息流通过潜在遗传网络的精确主义观点,即在这个网络中,准确的信号从一开始就存在,并在它们转化为最终空间模式时得以保留。