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新属,新种,从蟑螂肠道分离出的一个新成员。

gen. nov., sp. nov., a new member of the isolated from the gut of the cockroach .

作者信息

Guzman Juan, Sombolestani Atena Sadat, Poehlein Anja, Daniel Rolf, Cleenwerck Ilse, Vandamme Peter, Vilcinskas Andreas

机构信息

Department of Bioresources, Fraunhofer Institute for Molecular Biology and Applied Ecology, Giessen, Germany.

Institute for Insect Biotechnology, Justus-Liebig-University of Giessen, Giessen, Germany.

出版信息

Int J Syst Evol Microbiol. 2019 Jun;71(3). doi: 10.1099/ijsem.0.004666. Epub 2021 Feb 2.

Abstract

A novel bacterium designated G55GP and pertaining to the family was isolated from the gut of the Madagascar hissing cockroach . The Gram-negative cells were rod-shaped and non-motile. The complete 16S rRNA sequence of the strain G55GP showed the highest pairwise similarity to CFN-Cf-55T (95.35 %), suggesting it represents a potential new genus of the family . Phylogenetic analysis based on 16S rRNA gene and 106 orthologous housekeeping protein sequences revealed that G55GP forms a monophyletic clade with the genus , which thus far has also been isolated exclusively from insects. The G55GP genome size was 2.70 Mbp, and the G+C content was 45.4 mol%, which is lower than most acetic acid bacteria (51-68 mol%) but comparable to AH83 (45.1 mol%) and higher than A911 (36.8 mol%). Overall genome relatedness indices based on gene and protein sequences strongly supported the assignment of G55GP to a new genus within the family . The percentage of conserved proteins, which is a useful metric for genus differentiation, was below 54 % when comparing G55GP to type strains of acetic acid bacteria, thus strongly supporting our hypothesis that G55GP is a member of a yet-undescribed genus. The fatty acid composition of G55GP differed from that of closely related acetic acid bacteria, particularly given the presence of C 9/11 and the absence of C and C 2-OH fatty acids. Strain G55GP also differed in terms of metabolic features such as its ability to produce acid from d-mannitol, and its inability to produce acetic acid from ethanol or to oxidize glycerol to dihydroxyacetone. Based on the results of combined genomic, phenotypic and phylogenetic characterizations, isolate G55GP (=LMG 31394=DSM 111244) is considered to represent a new species in a new genus, for which we propose the name gen. nov., sp. nov.

摘要

从马达加斯加发声蟑螂的肠道中分离出一种名为G55GP的新型细菌,它属于[具体科名未给出]科。革兰氏阴性菌细胞呈杆状,无运动性。菌株G55GP的完整16S rRNA序列与[具体菌株名未给出]CFN-Cf-55T显示出最高的成对相似性(95.35%),这表明它代表了[具体科名未给出]科的一个潜在新属。基于16S rRNA基因和106个直系同源管家蛋白序列的系统发育分析表明,G55GP与[具体属名未给出]属形成一个单系分支,该属迄今为止也仅从昆虫中分离得到。G55GP基因组大小为2.70 Mbp,G+C含量为45.4摩尔%,低于大多数醋酸菌(51 - 68摩尔%),但与[具体菌株名未给出]AH83(45.1摩尔%)相当,高于[具体菌株名未给出]A911(36.8摩尔%)。基于基因和蛋白质序列的整体基因组相关性指数有力地支持了将G55GP归为[具体科名未给出]科内一个新属。保守蛋白的百分比是用于属区分的一个有用指标,当将G55GP与醋酸菌模式菌株比较时,该百分比低于54%,从而有力地支持了我们的假设,即G55GP是一个尚未描述的属的成员。G55GP的脂肪酸组成与密切相关的醋酸菌不同,特别是存在C 9/11且不存在C和C 2 - OH脂肪酸。菌株G55GP在代谢特征方面也有所不同,例如它能够从d - 甘露醇产酸,以及它不能从乙醇产生乙酸或不能将甘油氧化为二羟基丙酮。基于基因组、表型和系统发育综合特征的结果,分离株G55GP(=LMG 31394 = DSM 111244)被认为代表一个新属中的一个新物种,我们为此提议命名为[新属名和新种名未给出]属名新属,种名新种。

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