土壤中羧酸微生物链延伸的发生和生态。
The occurrence and ecology of microbial chain elongation of carboxylates in soils.
机构信息
School of Sustainable Engineering and the Built Environment, Arizona State University, Tempe, AZ, USA.
Biodesign Swette Center for Environmental Biotechnology, Arizona State University, Tempe, AZ, USA.
出版信息
ISME J. 2021 Jul;15(7):1907-1918. doi: 10.1038/s41396-021-00893-2. Epub 2021 Feb 8.
Chain elongation is a growth-dependent anaerobic metabolism that combines acetate and ethanol into butyrate, hexanoate, and octanoate. While the model microorganism for chain elongation, Clostridium kluyveri, was isolated from a saturated soil sample in the 1940s, chain elongation has remained unexplored in soil environments. During soil fermentative events, simple carboxylates and alcohols can transiently accumulate up to low mM concentrations, suggesting in situ possibility of microbial chain elongation. Here, we examined the occurrence and microbial ecology of chain elongation in four soil types in microcosms and enrichments amended with chain elongation substrates. All soils showed evidence of chain elongation activity with several days of incubation at high (100 mM) and environmentally relevant (2.5 mM) concentrations of acetate and ethanol. Three soils showed substantial activity in soil microcosms with high substrate concentrations, converting 58% or more of the added carbon as acetate and ethanol to butyrate, butanol, and hexanoate. Semi-batch enrichment yielded hexanoate and octanoate as the most elongated products and microbial communities predominated by C. kluyveri and other Firmicutes genera not known to undergo chain elongation. Collectively, these results strongly suggest a niche for chain elongation in anaerobic soils that should not be overlooked in soil microbial ecology studies.
链伸长是一种依赖于生长的厌氧代谢过程,它将乙酸盐和乙醇结合成丁酸盐、己酸盐和辛酸盐。虽然链伸长的模式微生物,即产丁酸梭菌,于 20 世纪 40 年代从饱和土壤样本中分离出来,但链伸长在土壤环境中仍未得到探索。在土壤发酵事件中,简单的羧酸和醇可以暂时积累到低 mM 浓度,这表明原位微生物链伸长的可能性。在这里,我们在添加链伸长底物的微宇宙和富集物中,研究了四种土壤类型中链伸长的发生和微生物生态学。所有土壤在高(100 mM)和环境相关(2.5 mM)浓度的乙酸盐和乙醇孵育数天后,都显示出链伸长活性的证据。三种土壤在高底物浓度的土壤微宇宙中表现出大量的活性,将添加的碳的 58%或更多转化为丁酸盐、正丁醇和己酸盐。半分批富集产生了己酸酯和辛酸酯作为最长的产物,微生物群落主要由产丁酸梭菌和其他未知进行链伸长的厚壁菌门属组成。总的来说,这些结果强烈表明链伸长在厌氧土壤中有一个小生境,在土壤微生物生态学研究中不应忽视。