Baesman Shaun M, Sutton John M, Fierst Janna L, Akob Denise M, Oremland Ronald S
U.S. Geological Survey, 345 Middlefield Road, Menlo Park, California, USA.
Department of Biological Sciences, The University of Alabama, Tuscaloosa, Alabama, USA.
Int J Syst Evol Microbiol. 2019 Jun;71(3). doi: 10.1099/ijsem.0.004698. Epub 2021 Feb 11.
A Gram-stain-negative, strictly anaerobic, non-motile, rod-shaped bacterium, designated SFB93, was isolated from the intertidal sediments of South San Francisco Bay, located near Palo Alto, CA, USA. SFB93 was capable of acetylenotrophic and diazotrophic growth, grew at 22-37 °C, pH 6.3-8.5 and in the presence of 10-45 g l NaCl. Phylogenetic analyses based on 16S rRNA gene sequencing showed that SFB93 represented a member of the genus with highest 16S rRNA gene sequence similarities to DSM 3246 (96.6 %), DSM 2380 (96.5 %), and DSM 2394 (96.7 %). Genome sequencing revealed a genome size of 3.22 Mbp and a DNA G+C content of 53.4 %. SFB93 had low genome-wide average nucleotide identity (81-87.5 %) and <70 % digital DNA-DNA hybridization value with other members of the genus . The phylogenetic position of SFB93 within the family and as a novel member of the genus was confirmed via phylogenetic reconstruction based on concatenated alignments of 92 bacterial core genes. On the basis of the results of phenotypic, genotypic and phylogenetic analyses, a novel species, sp. nov., is proposed, with SFB93 (=DSM 106009=JCM 33327=ATCC TSD-118) as the type strain.
从美国加利福尼亚州帕洛阿尔托附近的南旧金山湾潮间带沉积物中分离出一株革兰氏染色阴性、严格厌氧、无运动性的杆状细菌,命名为SFB93。SFB93能够以乙炔为营养源和以氮为营养源生长,在22-37°C、pH 6.3-8.5以及10-45 g/L NaCl存在的条件下生长。基于16S rRNA基因测序的系统发育分析表明,SFB93代表了该属的一个成员,其16S rRNA基因序列与DSM 3246(96.6%)、DSM 2380(96.5%)和DSM 2394(96.7%)具有最高的序列相似性。基因组测序显示基因组大小为3.22 Mbp,DNA G+C含量为53.4%。SFB93与该属的其他成员相比,全基因组平均核苷酸同一性较低(81-87.5%),数字DNA-DNA杂交值<70%。通过基于92个细菌核心基因的串联比对进行系统发育重建,证实了SFB93在该科内的系统发育位置以及作为该属新成员的地位。基于表型、基因型和系统发育分析结果,提出了一个新物种,即[具体物种名] sp. nov.,以SFB93(=DSM 106009=JCM 33327=ATCC TSD-118)作为模式菌株。