新种,新种,以及新种:从女性生殖道分离出的新型细菌。

sp. nov., sp. nov., and sp. nov.: novel bacteria isolated from the female genital tract.

作者信息

Srinivasan Sujatha, Beamer May A, Fiedler Tina L, Austin Michele N, Sizova Maria V, Strenk Susan M, Agnew Kathy J, Gowda G A Nagana, Raftery Daniel, Epstein Slava S, Fredricks David N, Hillier Sharon L

机构信息

Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.

Magee-Womens Research Institute, Pittsburgh, PA, USA.

出版信息

Int J Syst Evol Microbiol. 2019 Jun;71(3). doi: 10.1099/ijsem.0.004702. Epub 2021 Feb 22.

Abstract

Six strictly anaerobic Gram-negative bacteria representing three novel species were isolated from the female reproductive tract. The proposed type strains for each species were designated UPII 199-6, KA00182 and BV3C16-1. Phylogenetic analyses based on 16S rRNA gene sequencing indicated that the bacterial isolates were members of the genus . UPII 199-6 and KA00182 had 16S rRNA gene sequence identities of 99.9 % with 16S rRNA clone sequences previously amplified from the human vagina designated as type 1 and type 2, members of the human vaginal microbiota associated with bacterial vaginosis, preterm birth and HIV acquisition. UPII 199-6 exhibited sequence identities ranging from 92.9 to 93.6 % with validly named isolates and KA00182 had 16S rRNA gene sequence identities ranging from 92.6-94.2 %. BV3C16-1 was most closely related to with a 16S rRNA gene sequence identity of 95.4 %. Cells were coccoid or diplococcoid, non-motile and did not form spores. Genital tract isolates metabolized organic acids but were asaccharolytic. The isolates also metabolized amino acids. The DNA G+C content for the genome sequences of UPII 199-6, KA00182 and BV3C16-1 were 46.4, 38.9 and 49.8 mol%, respectively. Digital DNA-DNA hybridization and average nucleotide identity between the genital tract isolates and other validly named species suggest that each isolate type represents a new species. The major fatty acid methyl esters include the following: C, C, C dimethyl acetal (DMA) and summed feature 5 (C DMA and/or C 3-OH) in UPII 199-6; C and C 9 in KA00182; C; C 3-OH; and summed feature 5 in BV3C16-1. The isolates produced butyrate, isobutyrate, and isovalerate but there were specific differences including production of formate and propionate. Together, these data indicate that UPII 199-6, KA00182 and BV3C16-1 represent novel species within the genus . We propose the following names: sp. nov. for UPII 199-6 representing the type strain of this species (=DSM 111201=ATCC TSD-205), sp. nov. for KA00182 representing the type strain of this species (=DSM 111202=ATCC TSD-206) and sp. nov. for BV3C16-1 representing the type strain of this species (=DSM 111203=ATCC TSD-207).

摘要

从女性生殖道中分离出6株严格厌氧的革兰氏阴性菌,它们代表了3个新物种。每个物种的建议模式菌株分别命名为UPII 199 - 6、KA00182和BV3C16 - 1。基于16S rRNA基因测序的系统发育分析表明,这些分离出的细菌属于该属。UPII 199 - 6和KA00182与先前从人类阴道扩增的16S rRNA克隆序列具有99.9%的16S rRNA基因序列同一性,这些克隆序列被指定为1型和2型,它们是与细菌性阴道病、早产和感染艾滋病毒相关的人类阴道微生物群的成员。UPII 199 - 6与有效命名的该属分离株的序列同一性范围为92.9%至93.6%,KA00182的16S rRNA基因序列同一性范围为92.6% - 94.2%。BV3C16 - 1与该属关系最为密切,16S rRNA基因序列同一性为95.4%。细胞呈球状或双球状,无运动性,不形成孢子。生殖道分离株可代谢有机酸,但不能分解糖类。这些分离株还能代谢氨基酸。UPII 199 - 6、KA00182和BV3C16 - 1基因组序列的DNA G + C含量分别为46.4、38.9和49.8 mol%。生殖道分离株与其他有效命名的该属物种之间的数字DNA - DNA杂交和平均核苷酸同一性表明,每种分离株类型都代表一个新物种。主要脂肪酸甲酯包括:UPII 199 - 6中的C、C、C二甲基缩醛(DMA)和总和特征5(C DMA和/或C 3 - OH);KA00182中的C和C 9;BV3C16 - 1中的C、C 3 - OH和总和特征5。这些分离株产生丁酸、异丁酸和异戊酸,但存在特定差异,包括甲酸和丙酸的产生。总之,这些数据表明UPII 199 - 6、KA00182和BV3C16 - 1代表了该属内的新物种。我们提出以下名称:代表该物种模式菌株的UPII 199 - 6为新种(=DSM 111201 = ATCC TSD - 205),代表该物种模式菌株的KA00182为新种(=DSM 111202 = ATCC TSD - 206),代表该物种模式菌株的BV3C16 - 1为新种(=DSM 111203 = ATCC TSD - 207)。

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