National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju, Republic of Korea.
Laboratory of Animal Medicine, College of Veterinary Medicine, Chonnam National University, Gwangju, Republic of Korea.
Arch Virol. 2021 Apr;166(4):1103-1112. doi: 10.1007/s00705-021-04973-8. Epub 2021 Feb 11.
Dengue virus (DV) is a mosquito-borne virus that is endemic to many tropical and subtropical areas. Recently, the annual incidence of DV infection has increased worldwide, including in Korea, due to global warming and increased global travel. We therefore sought to characterize the molecular and evolutionary features of DV-1 and DV-4 isolated from Korean overseas travelers. We used phylogenetic analysis based on the full coding region to classify isolates of DV-1 in Korea into genotype I (43251, KP406802), genotype IV (KP406803), and genotype V (KP406801). In addition, we found that strains of DV-4 belonged to genotype I (KP406806) and genotype II (43257). Evidence of positive selection in DV-1 strains was identified in the C, prM, NS2A, and NS5 proteins, whereas DV-4 showed positive selection only in the non-structural proteins NS2A, NS3, and NS5. The substitution rates per site per year were 5.58 × 10 and 6.72 × 10 for DV-1 and DV-4, respectively, and the time of the most recent common ancestor was determined using the Bayesian skyline coalescent method. In this study, the molecular, phylogenetic, and evolutionary characteristics of Korean DV-1 and DV-4 isolates were evaluated for the first time.
登革病毒(DV)是一种蚊媒病毒,流行于许多热带和亚热带地区。由于全球变暖以及全球旅行的增加,DV 感染的年发病率在世界范围内包括韩国都有所增加。因此,我们试图描述从韩国海外旅行者中分离出的 DV-1 和 DV-4 的分子和进化特征。我们使用基于全长编码区的系统进化分析将韩国的 DV-1 分离株分为基因型 I(43251,KP406802)、基因型 IV(KP406803)和基因型 V(KP406801)。此外,我们发现 DV-4 株属于基因型 I(KP406806)和基因型 II(43257)。在 DV-1 株中鉴定到 C、prM、NS2A 和 NS5 蛋白中的正选择证据,而 DV-4 仅在非结构蛋白 NS2A、NS3 和 NS5 中显示正选择。DV-1 和 DV-4 的每个位点每年的替换率分别为 5.58×10-3 和 6.72×10-3,使用贝叶斯天空线共祖分析法确定了最近共同祖先的时间。在这项研究中,首次评估了韩国 DV-1 和 DV-4 分离株的分子、系统发育和进化特征。