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2015 年韩国旅行者感染的登革热病毒血清型 2 分离株的分子和进化分析。

Molecular and evolutionary analysis of dengue virus serotype 2 isolates from Korean travelers in 2015.

机构信息

National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju, Republic of Korea.

Laboratory Animal Medicine, College of Veterinary Medicine, Chonnam National University, Gwangju, Republic of Korea.

出版信息

Arch Virol. 2020 Aug;165(8):1739-1748. doi: 10.1007/s00705-020-04653-z. Epub 2020 May 14.

Abstract

In Korea, dengue infection has been frequently reported in travelers to tropical and subtropical countries. Global warming increases the probability of autochthonous dengue outbreaks in Korea. In this report, the molecular and evolutionary properties of four dengue virus (DENV) type 2 isolates from Korean overseas travelers were examined. Three of these isolates were classified as Cosmopolitan genotypes and further divided into sublineages 1 (43,253, 43,254) and 2 (43,248), while the other isolate (KBPV-VR29) was related to American genotypes. The variable amino acid motifs related to virulence and replication were identified in the structural and non-structural proteins. A negative selection mechanism was clearly verified in all of the DENV proteins. Potential recombination events were identified in the NS5 protein of the XSBN10 strain. The substitution rate (5.32 × 10 substitutions per site) and the time of the most recent common ancestor (TMRCA) for each evolutionary group were determined by the Bayesian skyline coalescent method. This study shows that DENV type 2 strains with distinct phylogenetic, evolutionary, and virulence characteristics have been introduced into Korea by overseas travelers and have the potential to trigger autochthonous dengue outbreaks.

摘要

在韩国,前往热带和亚热带国家的旅行者中经常报告登革热感染。全球变暖增加了韩国本土登革热爆发的可能性。在本报告中,研究了来自韩国海外旅行者的四个登革热病毒 (DENV) 2 型分离株的分子和进化特性。这三个分离株被归类为世界性基因型,并进一步分为亚谱系 1(43,253、43,254)和 2(43,248),而另一个分离株(KBPV-VR29)与美洲基因型有关。在结构和非结构蛋白中鉴定出与毒力和复制相关的可变氨基酸基序。在所有 DENV 蛋白中均清楚地验证了负选择机制。在 XSBN10 株的 NS5 蛋白中鉴定出潜在的重组事件。贝叶斯天空线共祖分析方法确定了每个进化群的替换率(每个位点 5.32×10 次替换)和最近共同祖先时间 (TMRCA)。本研究表明,具有独特进化、进化和毒力特征的 DENV 2 型株已由海外旅行者引入韩国,并有可能引发本土登革热爆发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8540/7351809/dcbccb5c96d1/705_2020_4653_Fig1_HTML.jpg

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