• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

芳香族O-去甲基化和开环反应中的冗余及其对植物源酚类代谢的影响。

Redundancy in aromatic O-demethylation and ring opening reactions in and their impact in the metabolism of plant derived phenolics.

作者信息

Perez Jose M, Kontur Wayne S, Gehl Carson, Gille Derek M, Ma Yanjun, Niles Alyssa V, Umana German, Donohue Timothy J, Noguera Daniel R

机构信息

Department of Civil and Environmental Engineering, University of Wisconsin-Madison, Madison, WI, USA.

DOE Great Lakes Bioenergy Research Center, Madison, WI, USA.

出版信息

Appl Environ Microbiol. 2021 Apr 15;87(8). doi: 10.1128/AEM.02794-20. Epub 2021 Feb 12.

DOI:10.1128/AEM.02794-20
PMID:33579679
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8091115/
Abstract

Lignin is a plant heteropolymer composed of phenolic subunits. Because of its heterogeneity and recalcitrance, the development of efficient methods for its valorization still remains an open challenge. One approach to utilize lignin is its chemical deconstruction into mixtures of monomeric phenolic compounds followed by biological funneling into a single product. DSM12444 has been previously engineered to produce 2-pyrone-4,6-dicarboxylic acid (PDC) from depolymerized lignin by simultaneously metabolizing multiple aromatics through convergent routes involving the intermediates 3-methoxygallic acid (3-MGA) and protocatechuic acid (PCA). We investigated enzymes predicted to be responsible for -demethylation and oxidative aromatic ring opening, two critical reactions involved in the metabolism of phenolics compounds by The results showed the involvement of DesA in -demethylation of syringic and vanillic acids, LigM in demethylation of vanillic acid and 3-MGA, and a new demethylase, DmtS, in the conversion of 3-MGA into gallic acid (GA). In addition, we found that LigAB was the main aromatic ring opening dioxygenase involved in 3-MGA, PCA, and GA metabolism, and that a previously uncharacterized dioxygenase, LigAB2, had high activity with GA. Our results indicate a metabolic route not previously identified in that involves -demethylation of 3-MGA to GA. We predict this pathway channels ∼15% of the carbon flow from syringic acid, with the rest following ring opening of 3-MGA. The new knowledge obtained in this study allowed for the creation of an improved engineered strain for the funneling of aromatic compounds that exhibits stoichiometric conversion of syringic acid into PDC. For lignocellulosic biorefineries to effectively contribute to reduction of fossil fuel use, they need to become efficient at producing chemicals from all major components of plant biomass. Making products from lignin will require engineering microorganisms to funnel multiple phenolic compounds to the chemicals of interest, and is a promising chassis for this technology. The ability of to efficiently and simultaneously degrade many phenolic compounds may be linked to having functionally redundant aromatic degradation pathways and enzymes with broad substrate specificity. A detailed knowledge of aromatic degradation pathways is thus essential to identify genetic engineering targets to maximize product yields. Furthermore, knowledge of enzyme substrate specificity is critical to redirect flow of carbon to desired pathways. This study described an uncharacterized pathway in and the enzymes that participate in this pathway, allowing the engineering of an improved strain for production of PDC from lignin.

摘要

木质素是一种由酚类亚基组成的植物杂聚物。由于其异质性和难降解性,开发高效的木质素增值方法仍然是一个悬而未决的挑战。利用木质素的一种方法是将其化学解构为单体酚类化合物的混合物,然后通过生物转化为单一产物。此前已对DSM12444进行工程改造,使其通过涉及中间体3-甲氧基没食子酸(3-MGA)和原儿茶酸(PCA)的收敛途径同时代谢多种芳烃,从而从解聚的木质素中生产2-吡喃酮-4,6-二羧酸(PDC)。我们研究了预测负责O-去甲基化和氧化芳环开环的酶,这是酚类化合物代谢过程中的两个关键反应。结果表明,DesA参与丁香酸和香草酸的O-去甲基化,LigM参与香草酸和3-MGA的去甲基化,以及一种新的去甲基酶DmtS参与3-MGA向没食子酸(GA)的转化。此外,我们发现LigAB是参与3-MGA、PCA和GA代谢的主要芳环开环双加氧酶,并且一种先前未表征的双加氧酶LigAB2对GA具有高活性。我们的结果表明在DSM12444中存在一条先前未鉴定的代谢途径,该途径涉及3-MGA向GA的O-去甲基化。我们预测该途径引导约15%的碳流来自丁香酸,其余的则通过3-MGA的环开环。本研究中获得的新知识使得能够创建一种改进的工程菌株,用于将芳族化合物转化为PDC,该菌株能够将丁香酸化学计量转化为PDC。对于木质纤维素生物精炼厂要有效地促进化石燃料使用的减少,它们需要在从植物生物质的所有主要成分生产化学品方面变得高效。从木质素生产产品将需要工程微生物将多种酚类化合物转化为感兴趣的化学品,而DSM12444是这项技术的一个有前途的底盘。DSM12444有效且同时降解多种酚类化合物的能力可能与具有功能冗余的芳族降解途径和具有广泛底物特异性的酶有关。因此,详细了解芳族降解途径对于确定基因工程靶点以最大化产品产量至关重要。此外,酶底物特异性的知识对于将碳流重新导向所需途径至关重要。本研究描述了DSM12444中一条未表征的途径以及参与该途径的酶,从而能够对一种改进的菌株进行工程改造,以从木质素生产PDC。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/1105045e11cd/AEM.02794-20_f011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/bd603efbce87/AEM.02794-20_f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/53f108fac405/AEM.02794-20_f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/94523e2f0545/AEM.02794-20_f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/f456d2700cab/AEM.02794-20_f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/2c781ebb06a3/AEM.02794-20_f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/424ad0c42cc2/AEM.02794-20_f006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/0963921cbb57/AEM.02794-20_f007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/47669887eda9/AEM.02794-20_f008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/d0b14d708862/AEM.02794-20_f009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/88f06ca92335/AEM.02794-20_f010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/1105045e11cd/AEM.02794-20_f011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/bd603efbce87/AEM.02794-20_f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/53f108fac405/AEM.02794-20_f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/94523e2f0545/AEM.02794-20_f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/f456d2700cab/AEM.02794-20_f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/2c781ebb06a3/AEM.02794-20_f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/424ad0c42cc2/AEM.02794-20_f006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/0963921cbb57/AEM.02794-20_f007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/47669887eda9/AEM.02794-20_f008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/d0b14d708862/AEM.02794-20_f009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/88f06ca92335/AEM.02794-20_f010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6b3/8091115/1105045e11cd/AEM.02794-20_f011.jpg

相似文献

1
Redundancy in aromatic O-demethylation and ring opening reactions in and their impact in the metabolism of plant derived phenolics.芳香族O-去甲基化和开环反应中的冗余及其对植物源酚类代谢的影响。
Appl Environ Microbiol. 2021 Apr 15;87(8). doi: 10.1128/AEM.02794-20. Epub 2021 Feb 12.
2
Engineering to produce -muconic acid from biomass aromatics.利用生物质芳烃生产 - 马来酸酐。
Appl Environ Microbiol. 2024 Jan 24;90(1):e0166023. doi: 10.1128/aem.01660-23. Epub 2023 Dec 20.
3
Catabolism of β-5 linked aromatics by .β-5 键连接芳香族化合物的分解代谢由.
mBio. 2024 Aug 14;15(8):e0171824. doi: 10.1128/mbio.01718-24. Epub 2024 Jul 16.
4
Aromatic Dimer Dehydrogenases from Reduce Monoaromatic Diketones.芳基二聚体脱氢酶还原单芳基二酮。
Appl Environ Microbiol. 2021 Nov 24;87(24):e0174221. doi: 10.1128/AEM.01742-21. Epub 2021 Oct 6.
5
Anaerobic Degradation of Syringic Acid by an Adapted Strain of Rhodopseudomonas palustris.沼泽红假单胞菌驯化菌株对丁香酸的厌氧降解。
Appl Environ Microbiol. 2020 Jan 21;86(3). doi: 10.1128/AEM.01888-19.
6
iNovo479: Metabolic Modeling Provides a Roadmap to Optimize Bioproduct Yield from Deconstructed Lignin Aromatics by .iNovo479:代谢建模为优化从解构木质素芳烃中获得生物产品产量提供了路线图 。 (原文结尾by后内容缺失)
Metabolites. 2022 Apr 18;12(4):366. doi: 10.3390/metabo12040366.
7
Production of carotenoids from aromatics and pretreated lignocellulosic biomass by .通过 从芳烃和预处理木质纤维素生物质生产类胡萝卜素。
Appl Environ Microbiol. 2023 Dec 21;89(12):e0126823. doi: 10.1128/aem.01268-23. Epub 2023 Nov 28.
8
Metabolism of syringyl lignin-derived compounds in Pseudomonas putida enables convergent production of 2-pyrone-4,6-dicarboxylic acid.丁香型木质素衍生化合物在恶臭假单胞菌中的代谢使 2-吡喃酮-4,6-二羧酸的聚合生产成为可能。
Metab Eng. 2021 May;65:111-122. doi: 10.1016/j.ymben.2021.02.005. Epub 2021 Mar 16.
9
The Syringate -Demethylase Gene of sp. Strain SYK-6 Is Regulated by DesX, while Other Vanillate and Syringate Catabolism Genes Are Regulated by DesR.sp. 菌株SYK-6的丁香酸脱甲基酶基因受DesX调控,而其他香草酸和丁香酸分解代谢基因受DesR调控。
Appl Environ Microbiol. 2020 Oct 28;86(22). doi: 10.1128/AEM.01712-20.
10
Biodegradation of lignin monomers and bioconversion of ferulic acid to vanillic acid by Paraburkholderia aromaticivorans AR20-38 isolated from Alpine forest soil.从高山森林土壤中分离出的芳香假单胞菌 AR20-38 对木质素单体的生物降解和阿魏酸的生物转化为香草酸。
Appl Microbiol Biotechnol. 2021 Apr;105(7):2967-2977. doi: 10.1007/s00253-021-11215-z. Epub 2021 Mar 9.

引用本文的文献

1
Using DNA affinity purification sequencing (DAP-seq) to identify binding sites of potential DSM12444 transcription factors.使用DNA亲和纯化测序(DAP-seq)来鉴定潜在的DSM12444转录因子的结合位点。
Microbiol Resour Announc. 2025 Aug 14;14(8):e0026025. doi: 10.1128/mra.00260-25. Epub 2025 Jul 22.
2
Catabolic System of Syringic Acid, a Key Intermediate of Lignin-Derived Aromatic Compounds, via a Novel Linear Pathway in sp. NGC7.丁香酸的分解代谢系统,木质素衍生芳香化合物的关键中间体,通过sp. NGC7中的一条新型线性途径。
J Agric Food Chem. 2025 Jul 30;73(30):18899-18913. doi: 10.1021/acs.jafc.5c04544. Epub 2025 Jul 16.
3

本文引用的文献

1
Anaerobic Degradation of Syringic Acid by an Adapted Strain of Rhodopseudomonas palustris.沼泽红假单胞菌驯化菌株对丁香酸的厌氧降解。
Appl Environ Microbiol. 2020 Jan 21;86(3). doi: 10.1128/AEM.01888-19.
2
A heterodimeric glutathione -transferase that stereospecifically breaks lignin's β()-aryl ether bond reveals the diversity of bacterial β-etherases.一种立体选择性断裂木质素β()-芳基醚键的异二聚体谷胱甘肽转移酶揭示了细菌β-醚酶的多样性。
J Biol Chem. 2019 Feb 8;294(6):1877-1890. doi: 10.1074/jbc.RA118.006548. Epub 2018 Dec 12.
3
Rapid, Parallel Identification of Catabolism Pathways of Lignin-Derived Aromatic Compounds in Novosphingobium aromaticivorans.
Uptake system of lignin-derived aromatic acids in promising Sphingomonadaceae strains for lignin valorization through biological funneling.
通过生物富集实现木质素增值的鞘氨醇单胞菌科菌株中木质素衍生芳香酸的摄取系统
Sci Rep. 2025 Jul 2;15(1):23644. doi: 10.1038/s41598-025-08757-x.
4
The potential of for degrading wheat straw and its key genes in lignocellulose degradation.[某种生物]降解小麦秸秆的潜力及其在木质纤维素降解中的关键基因。 (注:原文中“for degrading wheat straw”前缺少具体主语,这里翻译时补充了“[某种生物]”,以使句子完整通顺)
Front Microbiol. 2025 Apr 23;16:1550495. doi: 10.3389/fmicb.2025.1550495. eCollection 2025.
5
Structural insights into S-lignin O-demethylation via a rare class of heme peroxygenase enzymes.通过一类罕见的血红素过氧化物酶对S-木质素O-去甲基化的结构见解。
Nat Commun. 2025 Feb 20;16(1):1815. doi: 10.1038/s41467-025-57129-6.
6
Catabolism of β-5 linked aromatics by .β-5 键连接芳香族化合物的分解代谢由.
mBio. 2024 Aug 14;15(8):e0171824. doi: 10.1128/mbio.01718-24. Epub 2024 Jul 16.
7
Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle.微生物多酚代谢是永久冻土解冻碳循环的一部分。
Nat Microbiol. 2024 Jun;9(6):1454-1466. doi: 10.1038/s41564-024-01691-0. Epub 2024 May 28.
8
Transcriptomic and metabolomic analysis reveals the influence of carbohydrates on lignin degradation mediated by .转录组学和代谢组学分析揭示了碳水化合物对由……介导的木质素降解的影响。
Front Microbiol. 2024 Jan 25;15:1224855. doi: 10.3389/fmicb.2024.1224855. eCollection 2024.
9
Engineering to produce -muconic acid from biomass aromatics.利用生物质芳烃生产 - 马来酸酐。
Appl Environ Microbiol. 2024 Jan 24;90(1):e0166023. doi: 10.1128/aem.01660-23. Epub 2023 Dec 20.
10
Production of carotenoids from aromatics and pretreated lignocellulosic biomass by .通过 从芳烃和预处理木质纤维素生物质生产类胡萝卜素。
Appl Environ Microbiol. 2023 Dec 21;89(12):e0126823. doi: 10.1128/aem.01268-23. Epub 2023 Nov 28.
快速、平行鉴定新型芳香杆菌中木质素衍生芳香化合物的分解代谢途径。
Appl Environ Microbiol. 2018 Oct 30;84(22). doi: 10.1128/AEM.01185-18. Print 2018 Nov 15.
4
Utilization of Lignocellulosic Biomass via Novel Sustainable Process.通过新型可持续工艺利用木质纤维素生物质。
J Oleo Sci. 2018 Sep 1;67(9):1059-1070. doi: 10.5650/jos.ess18075. Epub 2018 Aug 14.
5
uses a Nu-class glutathione -transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin.利用 Nu 类谷胱甘肽转移酶作为谷胱甘肽裂解酶,打破木质素的β-芳基醚键。
J Biol Chem. 2018 Apr 6;293(14):4955-4968. doi: 10.1074/jbc.RA117.001268. Epub 2018 Feb 15.
6
Enzymatic Depolymerization of Lignin with Release of Syringyl, Guaiacyl, and Tricin Units.木质素的酶解及其对愈创木基、松柏基和苯三酚型单元的释放。
Appl Environ Microbiol. 2018 Jan 17;84(3). doi: 10.1128/AEM.02076-17. Print 2018 Feb 1.
7
a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts.一种用于将木质纤维素转化为萜烯生物燃料和生物制品的新型平台生物。
Biotechnol Biofuels. 2017 Oct 23;10:241. doi: 10.1186/s13068-017-0927-5. eCollection 2017.
8
Bacterial catabolism of lignin-derived aromatics: New findings in a recent decade: Update on bacterial lignin catabolism.细菌对木质素衍生芳烃的分解代谢:近十年来的新发现:细菌木质素分解代谢的最新进展。
Environ Microbiol Rep. 2017 Dec;9(6):679-705. doi: 10.1111/1758-2229.12597.
9
Opportunities and challenges in biological lignin valorization.生物木质素增值的机遇与挑战
Curr Opin Biotechnol. 2016 Dec;42:40-53. doi: 10.1016/j.copbio.2016.02.030. Epub 2016 Mar 11.
10
Metabolism of Multiple Aromatic Compounds in Corn Stover Hydrolysate by Rhodopseudomonas palustris.沼泽红假单胞菌对玉米秸秆水解物中多种芳香族化合物的代谢
Environ Sci Technol. 2015 Jul 21;49(14):8914-22. doi: 10.1021/acs.est.5b02062. Epub 2015 Jul 9.