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新属,新种,该科的一个新成员,从人类临床样本中分离得到。

gen. nov., sp. nov., a new member of the family , isolated from human clinical samples.

作者信息

Maheux Andrée F, Boudreau Dominique K, Abed Jehane Y, Bérubé Ève, Brodeur Stéphanie, Bernard Kathryn A, Hashimi Ameena, Ducrey Éloïse, Guay Émilie F, Raymond Frédéric, Corbeil Jacques, Domingo Marc-Christian, Roy Paul H, Boissinot Maurice, Tocheva Elitza I, Omar Rabeea F

机构信息

Centre de recherche en infectiologie de l'Université Laval, Axe Maladies infectieuses et immunitaires, Centre de recherche du CHU de Québec-Université Laval, Québec City (Québec), Canada.

Present address: AFM water consulting, Québec City (Québec), Canada.

出版信息

Int J Syst Evol Microbiol. 2019 Jun;71(3). doi: 10.1099/ijsem.0.004691. Epub 2021 Feb 15.

Abstract

A rod-shaped, motile anaerobic bacterium, designated CCRI-22567, was isolated from a vaginal sample of a woman diagnosed with bacterial vaginosis and subjected to a polyphasic taxonomic study. The novel strain was capable of growth at 30-42 °C (optimum, 42 °C), at pH 5.5-8.5 (optimum, pH 7.0-7.5) and in the presence of 0-1.5 % (w/v) NaCl (optimally at 0.5 % NaCl). The phylogenetic trees based on 16S rRNA gene sequences showed that strain CCRI-22567 forms a distinct evolutionary lineage independent of other taxa in the family . Strain CCRI-22567 exhibited 90.1 % 16S rRNA gene sequence similarity to ACC19a and 89.7 % to subsp. ATCC 43716. The three closest organisms with an available whole genome were compared to strain CCRI-22567 for genomic relatedness assessment. The genomic average nucleotide identities (OrthoANIu) obtained with ACC19a, subsp. ATCC 43715 and ATCC 35896 were 71.8, 70.3 and 69.6 %, respectively. Strain CCRI-22567 contained C ω9 and C ω9 DMA as the major fatty acids. The DNA G+C content of strain CCRI-22567 based on its genome sequence was 33.8 mol%. On the basis of the phylogenetic, chemotaxonomic and other phenotypic properties, strain CCRI-22567 is considered to represent a new genus and species within the family , for which the name gen. nov., sp. nov., is proposed. The type strain of is CCRI-22567 (=LMG 31278=DSM 107614=CCUG 72594).

摘要

从一名被诊断为细菌性阴道病的女性阴道样本中分离出一株杆状、运动性厌氧细菌,命名为CCRI - 22567,并对其进行了多相分类学研究。该新菌株能够在30 - 42°C(最适温度为42°C)、pH 5.5 - 8.5(最适pH为7.0 - 7.5)以及0 - 1.5%(w/v)NaCl(最适NaCl浓度为0.5%)的条件下生长。基于16S rRNA基因序列构建的系统发育树表明,菌株CCRI - 22567形成了一个独立于该科其他分类单元的独特进化谱系。菌株CCRI - 22567与ACC19a的16S rRNA基因序列相似度为90.1%,与亚种ATCC 43716的相似度为89.7%。将三个有可用全基因组的亲缘关系最近的菌株与菌株CCRI - 22567进行基因组相关性评估。与ACC19a、亚种ATCC 43715和ATCC 35896的基因组平均核苷酸同源性(OrthoANIu)分别为71.8%、70.3%和69.6%。菌株CCRI - 22567以C ω9和C ω9 DMA作为主要脂肪酸。基于基因组序列,菌株CCRI - 22567的DNA G + C含量为33.8 mol%。基于系统发育、化学分类和其他表型特征,菌株CCRI - 22567被认为代表了该科内的一个新属和新种,为此提出新属名gen. nov.,新种名sp. nov.。gen. nov.的模式菌株为CCRI - 22567(=LMG 31278 = DSM 107614 = CCUG 72594)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0b/8375425/628abd69f018/ijsem-71-4691-g001.jpg

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