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利用主导转子照亮大环的黑暗构象空间。

Illuminating the dark conformational space of macrocycles using dominant rotors.

机构信息

Department of Chemistry, University of Toronto, Toronto, Ontario, Canada.

Department of Computer Science, University of Toronto, Toronto, Ontario, Canada.

出版信息

Nat Chem. 2021 Mar;13(3):218-225. doi: 10.1038/s41557-020-00620-y. Epub 2021 Feb 15.

Abstract

Three-dimensional conformation is the primary determinant of molecular properties. The thermal energy available at room temperature typically equilibrates the accessible conformational states. Here, we introduce a method for isolating unique and previously understudied conformations of macrocycles. The observation of unusual conformations of 16- to 22-membered rings has been made possible by controlling their interconversion using dominant rotors, which represent tunable atropisomeric constituents with relatively high rotational barriers. Density functional theory and in situ NMR measurements suggest that dominant rotor candidates for the amino-acid-based structures considered here should possess a rotational energy barrier of at least 25 kcal mol. Notable differences in the geometries of the macrocycle conformations were identified by NMR spectroscopy and X-ray crystallography. There is evidence that amino acid residues can be forced into rare turn motifs not observed in the corresponding linear counterparts and homodetic rings. These findings should unlock new avenues for studying the conformation-activity relationships of bioactive molecules.

摘要

三维构象是分子性质的主要决定因素。室温下可用的热能通常使可及构象状态达到平衡。在这里,我们介绍了一种分离大环独特且以前研究较少构象的方法。通过使用代表具有相对较高旋转势垒的可调节对映异构组成部分的主导转子来控制其互变,从而有可能观察到 16 至 22 元环的不寻常构象。密度泛函理论和原位 NMR 测量表明,此处考虑的基于氨基酸的结构的主导转子候选物应具有至少 25 kcal/mol 的旋转能垒。通过 NMR 光谱和 X 射线晶体学鉴定了大环构象的几何形状的显著差异。有证据表明,氨基酸残基可以被强制进入在相应的线性对应物和同系物环中未观察到的罕见转角模体。这些发现应该为研究生物活性分子的构象-活性关系开辟新的途径。

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