Deen Dayal Upadhyaya Kaushal Kendra, Jamia Millia Islamia, New Delhi, 110025, India.
Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi, 110025, India.
Food Chem Toxicol. 2021 Apr;150:112057. doi: 10.1016/j.fct.2021.112057. Epub 2021 Feb 14.
World is familiar with the viral pathogen Severe Acute Respiratory Syndrome Coronavirus 2 (SARS CoV-2). The principle working enzymes of SARS CoV-2 have been identified as main proteases 3Cl pro which act as main regulators for SARS infection. The need for therapy is required immediately pertaining to the vulnerable conditions. Protein-ligand studies are imperative for understanding the functioning of biological interactions as they are crucial in providing a hypothetical origin for the design and unearthing of novel drug targets. Phytoconstituents from Glycyrrhiza glabra, earlier reported to be anticancerous in nature were used as repurposed drugs against SARS CoV-2 main protease 3Clpro. We analyzed the molecular interactions of protein-phytocompounds, by AutoDock Vina 4.2 tools. The best interactions of each algorithm were subjected to molecular dynamic (MD) simulations to have an insight of the molecular dynamic mechanisms involved. Selected phytoconstituents gave a good score for binding affinity with the main protease 6LU7 of SARS CoV-2 as compared to the antiviral drugs already being used in the disease therapy. DehydroglyasperinC(-8.7,-8.1,-6.7,-7.1)kcal/mol, Licochalcone D(-8.4,-8.2,-7.1,-7.9) kcal/mol, Liquiritin(-8.6,-9.0,-7.2,-7.8) kcal/mol have showed energy interactions with 3Clpro better than many FDA approved repurposed drugs; Remdesvir, Favipiravir, and Hydroxychloroquine. MD Simulation also corelates our findings for molecular docking studies.
世界熟知病毒病原体严重急性呼吸系统综合征冠状病毒 2(SARS-CoV-2)。SARS-CoV-2 的主要工作酶已被确定为主要蛋白酶 3CL pro,它是 SARS 感染的主要调节剂。由于情况脆弱,因此需要立即进行治疗。蛋白质配体研究对于理解生物相互作用的功能至关重要,因为它们对于提供设计和发现新型药物靶标的假设起源至关重要。甘草中的植物成分以前被报道具有抗癌作用,被用作针对 SARS-CoV-2 主要蛋白酶 3CLpro 的重新利用药物。我们使用 AutoDock Vina 4.2 工具分析了蛋白质-植物化合物的分子相互作用。对每种算法的最佳相互作用进行分子动力学(MD)模拟,以深入了解所涉及的分子动力学机制。与已用于疾病治疗的抗病毒药物相比,选定的植物成分与 SARS-CoV-2 的主要蛋白酶 6LU7 的结合亲和力得分较高。与已用于疾病治疗的抗病毒药物相比,脱氢甘草次酸 C(-8.7、-8.1、-6.7、-7.1)kcal/mol、甘草查尔酮 D(-8.4、-8.2、-7.1、-7.9)kcal/mol、甘草素(-8.6、-9.0、-7.2、-7.8)kcal/mol 与 3CL pro 的能量相互作用优于许多已获得 FDA 批准的重新利用药物;瑞德西韦、法匹拉韦和羟氯喹。MD 模拟也与我们的分子对接研究结果相关。