Palmieri Mattia, Wyres Kelly L, Mirande Caroline, Qiang Zhao, Liyan Ye, Gang Chen, Goossens Herman, van Belkum Alex, Yan Ping Luo
bioMérieux, Data Analytics Unit, La Balme Les Grottes, France.
Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria, Australia.
Microb Genom. 2019 Sep;7(6). doi: 10.1099/mgen.0.000520.
is a frequent cause of nosocomial and severe community-acquired infections. Multidrug-resistant (MDR) and hypervirulent (hv) strains represent major threats, and tracking their emergence, evolution and the emerging convergence of MDR and hv traits is of major importance. We employed whole-genome sequencing (WGS) to study the evolution and epidemiology of a large longitudinal collection of clinical isolates from the H301 hospital in Beijing, China. Overall, the population was highly diverse, although some clones were predominant. Strains belonging to clonal group (CG) 258 were dominant, and represented the majority of carbapenemase-producers. While CG258 strains showed high diversity, one clone, ST11-KL47, represented the majority of isolates, and was highly associated with the KPC-2 carbapenemase and several virulence factors, including a virulence plasmid. The second dominant clone was CG23, which is the major hv clone globally. While it is usually susceptible to multiple antibiotics, we found some isolates harbouring MDR plasmids encoding for ESBLs and carbapenemases. We also reported the local emergence of a recently described high-risk clone, ST383. Conversely to strains belonging to CG258, which are usually associated to KPC-2, ST383 strains seem to readily acquire carbapenemases of different types. Moreover, we found several ST383 strains carrying the hypervirulence plasmid. Overall, we detected about 5 % of simultaneous carriage of AMR genes (ESBLs or carbapenemases) and hypervirulence genes. Tracking the emergence and evolution of such strains, causing severe infections with limited treatment options, is fundamental in order to understand their origin and evolution and to limit their spread. This article contains data hosted by Microreact.
是医院获得性感染和严重社区获得性感染的常见原因。多重耐药(MDR)和高毒力(hv)菌株构成主要威胁,追踪它们的出现、进化以及MDR和hv特征的新出现的趋同情况至关重要。我们采用全基因组测序(WGS)来研究来自中国北京H301医院的大量临床分离株的纵向收集样本的进化和流行病学情况。总体而言,尽管有一些克隆占主导地位,但菌群高度多样化。属于克隆群(CG)258的菌株占主导,并且代表了大多数碳青霉烯酶产生菌。虽然CG258菌株表现出高度多样性,但一个克隆,即ST11-KL47,代表了大多数分离株,并且与KPC-2碳青霉烯酶和几种毒力因子高度相关,包括一种毒力质粒。第二个占主导的克隆是CG23,它是全球主要的hv克隆。虽然它通常对多种抗生素敏感,但我们发现一些分离株携带编码超广谱β-内酰胺酶(ESBLs)和碳青霉烯酶的MDR质粒。我们还报告了最近描述的高风险克隆ST383在当地的出现。与通常与KPC-2相关的CG258菌株相反,ST383菌株似乎很容易获得不同类型的碳青霉烯酶。此外,我们发现几个携带高毒力质粒的ST383菌株。总体而言,我们检测到约5%的分离株同时携带抗菌药物耐药(AMR)基因(ESBLs或碳青霉烯酶)和高毒力基因。追踪这类导致严重感染且治疗选择有限的菌株的出现和进化,对于了解它们的起源和进化以及限制它们的传播至关重要。本文包含由Microreact托管的数据。