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推进计算方法在 GPCR 配体发现中的应用趋势。

Trends in application of advancing computational approaches in GPCR ligand discovery.

机构信息

Division of Infectious Diseases and Global Public Health, Department of Medicine, School of Medicine, University of California at San Diego, La Jolla, CA 92093, USA.

Ciechanover Institute of Precision and Regenerative Medicine, School of Life and Health Sciences, Chinese University of Hong Kong, Shenzhen 518172, China.

出版信息

Exp Biol Med (Maywood). 2021 May;246(9):1011-1024. doi: 10.1177/1535370221993422. Epub 2021 Feb 27.

Abstract

G protein-coupled receptors (GPCRs) comprise the most important superfamily of protein targets in current ligand discovery and drug development. GPCRs are integral membrane proteins that play key roles in various cellular signaling processes. Therefore, GPCR signaling pathways are closely associated with numerous diseases, including cancer and several neurological, immunological, and hematological disorders. Computer-aided drug design (CADD) can expedite the process of GPCR drug discovery and potentially reduce the actual cost of research and development. Increasing knowledge of biological structures, as well as improvements on computer power and algorithms, have led to unprecedented use of CADD for the discovery of novel GPCR modulators. Similarly, machine learning approaches are now widely applied in various fields of drug target research. This review briefly summarizes the application of rising CADD methodologies, as well as novel machine learning techniques, in GPCR structural studies and bioligand discovery in the past few years. Recent novel computational strategies and feasible workflows are updated, and representative cases addressing challenging issues on olfactory receptors, biased agonism, and drug-induced cardiotoxic effects are highlighted to provide insights into future GPCR drug discovery.

摘要

G 蛋白偶联受体(GPCRs)是目前配体发现和药物开发中最重要的蛋白质靶标超家族。GPCR 是整合膜蛋白,在各种细胞信号转导过程中发挥关键作用。因此,GPCR 信号通路与许多疾病密切相关,包括癌症以及几种神经、免疫和血液疾病。计算机辅助药物设计(CADD)可以加速 GPCR 药物发现的过程,并有可能降低研究和开发的实际成本。对生物结构的了解不断增加,以及计算机能力和算法的改进,使得 CADD 在新型 GPCR 调节剂的发现中得到了前所未有的应用。同样,机器学习方法现在也广泛应用于药物靶标研究的各个领域。本文简要总结了近年来 CADD 方法和新型机器学习技术在 GPCR 结构研究和生物配体发现中的应用。更新了最近的新型计算策略和可行的工作流程,并重点介绍了针对嗅觉受体、偏向激动剂和药物引起的心脏毒性作用等挑战性问题的代表性案例,为未来的 GPCR 药物发现提供了思路。

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