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高原草本植物(豆科)的完整叶绿体基因组。

The complete chloroplast genome of Plateau herb (Fabaceae).

作者信息

Nie Li-Yun, Wang Ai-Hua, Duan Lei, Chen Hong-Feng, Wang Fa-Guo

机构信息

Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.

College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.

出版信息

Mitochondrial DNA B Resour. 2021 Feb 17;6(2):641-642. doi: 10.1080/23802359.2021.1878955.

DOI:10.1080/23802359.2021.1878955
PMID:33644396
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7894450/
Abstract

is a perennial herb, which restricts in Xizang (Tibet) of China, Afghanistan, and Pakistan. The complete chloroplast genome was sequenced using the Illumina Hiseq X-Ten platform. The genome lacks an inverted repeat (IR) region, containing 75 protein-coding genes, 29 tRNAs genes, and 4 rRNAs. The overall GC content is 34.6%. A phylogenetic tree based on the whole chloroplast genomes of 15 species indicated that had a close relationship with the genus , and it nested in the inverted repeat-lacking clade (IRLC), of the subfamily Papilionoideae (Leguminosae).

摘要

它是一种多年生草本植物,分布于中国西藏、阿富汗和巴基斯坦。使用Illumina Hiseq X-Ten平台对其完整叶绿体基因组进行了测序。该基因组缺乏反向重复(IR)区域,包含75个蛋白质编码基因、29个tRNA基因和4个rRNA。总体GC含量为34.6%。基于15个物种的完整叶绿体基因组构建的系统发育树表明,它与某属关系密切,并嵌套在豆科蝶形花亚科的缺乏反向重复的分支(IRLC)中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f1fb/7894450/362c1c311552/TMDN_A_1878955_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f1fb/7894450/362c1c311552/TMDN_A_1878955_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f1fb/7894450/362c1c311552/TMDN_A_1878955_F0001_C.jpg

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本文引用的文献

1
Chloroplast genome structure in Ilex (Aquifoliaceae).冬青属(冬青科)叶绿体基因组结构
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IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.IQ-TREE:一种用于估计最大似然系统发育树的快速且有效的随机算法。
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MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
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A phylogeny of legumes (Leguminosae) based on analysis of the plastid matK gene resolves many well-supported subclades within the family.基于质体 matK 基因分析的豆科(豆科)系统发育解决了该科内许多支持良好的亚科。
Am J Bot. 2004 Nov;91(11):1846-62. doi: 10.3732/ajb.91.11.1846.
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