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基于结构模拟人甲状腺激素系统重要酶甲状腺素运载蛋白的羟基化联苯同系物(OHPCBs)

Structure-based mimicking of hydroxylated biphenyl congeners (OHPCBs) for human transthyretin, an important enzyme of thyroid hormone system.

作者信息

Kumari Reena, Dhankhar Poonam, Dalal Vikram

机构信息

Department of Mathematics and Statistics, Swami Vivekanand Subharti University, Meerut, 250005, India.

Department of Biotechnology, IIT Roorkee, Uttarakhand, 247667, India.

出版信息

J Mol Graph Model. 2021 Jun;105:107870. doi: 10.1016/j.jmgm.2021.107870. Epub 2021 Feb 19.

Abstract

In humans, transthyretin (hTTR) is a plasma protein act as a transporter of thyroxine (T4) in the blood. Polychlorinated biphenyls (PCBs) are used in coolants, transformers, plasticizers, and pesticide extenders, etc. due to their physical properties, chemical stability, and dielectric properties. Cytochrome P450 can oxidize the PCBs into hydroxylated PCBs (OHPCBs) which can further interact with hTTR results in hepatoxicity, loss of metabolic rate, memory problems, and neurotoxicity. Molecular docking results show that OHPCBs bind at the active site of hTTR with a more binding affinity as compared to T4. Further, molecular dynamics simulation has been done to confirm the stability of hTTR-OHPCBs complexes. Several analysis parameters like RMSD, RMSF, Rg, SASA, hydrogen bonds numbers, PCA, and FEL revealed that binding of OHPCBs with hTTR results in the formation of stable hTTR-OHPCBs complexes. Individual residues decomposition analysis confirms that Lys15, Leu17, Ala108, Ala109, Leu110, Ser117, and Thr119 of hTTR plays a major role in the binding of OHPCBs to form the lower energy hTTR-OHPCBs complexes. Molecular docking and simulations results emphasize that OHPCBs can efficiently bind at the active site of hTTR, which further leads to inhibition of transportation of T4 in human blood.

摘要

在人类中,转甲状腺素蛋白(hTTR)是一种血浆蛋白,在血液中充当甲状腺素(T4)的转运蛋白。多氯联苯(PCBs)因其物理性质、化学稳定性和介电性能,被用于冷却剂、变压器、增塑剂和农药增量剂等。细胞色素P450可将多氯联苯氧化为羟基化多氯联苯(OHPCBs),后者可进一步与hTTR相互作用,导致肝毒性、代谢率下降、记忆问题和神经毒性。分子对接结果表明,与T4相比,OHPCBs以更高的结合亲和力结合在hTTR的活性位点。此外,还进行了分子动力学模拟以确认hTTR-OHPCBs复合物的稳定性。几个分析参数,如均方根偏差(RMSD)、均方根波动(RMSF)、回旋半径(Rg)、溶剂可及表面积(SASA)、氢键数量、主成分分析(PCA)和自由能景观(FEL)表明,OHPCBs与hTTR的结合导致形成稳定的hTTR-OHPCBs复合物。单个残基分解分析证实,hTTR的赖氨酸15、亮氨酸17、丙氨酸108、丙氨酸109、亮氨酸110、丝氨酸117和苏氨酸119在OHPCBs结合形成低能量hTTR-OHPCBs复合物中起主要作用。分子对接和模拟结果强调,OHPCBs可有效结合在hTTR的活性位点,这进一步导致人类血液中T4转运受到抑制。

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