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双歧杆菌的分离与回收方法。

Methods for Isolation and Recovery of Bifidobacteria.

机构信息

Department of Microbiology and Biochemistry of Dairy Products, Dairy Research Institute of Asturias (IPLA-CSIC), Villaviciosa, Asturias, Spain.

Instituto de Investigación Sanitaria del Principado de Asturias (ISPA), Oviedo, Asturias, Spain.

出版信息

Methods Mol Biol. 2021;2278:1-12. doi: 10.1007/978-1-0716-1274-3_1.

DOI:10.1007/978-1-0716-1274-3_1
PMID:33649943
Abstract

Since their discovery, bifidobacteria have been considered to represent cornerstone commensal microorganisms in the host-microbiome interface at the intestinal level. Bifidobacteria have therefore enjoyed increasing scientific and commercial interest as a source of microorganisms with probiotic potential. However, since functional and probiotic traits are strictly strain-dependent, there is a constant need to isolate, cultivate, and characterize novel strains, activities that require the utilization of appropriate media, as well as robust isolation, cultivation, and preservation techniques. Besides, effective isolation of bifidobacteria from natural environments might require different manipulation and cultivation media and conditions depending on the specific characteristics of the sample material, the presence of competitive microbiota, the metabolic state in which bifidobacteria might be encountered within the sample and the particular metabolic traits of the bifidobacterial species adapted to such inhabitation.A wide array of culture media recipes have been described in the literature to routinely isolate and grow bifidobacteria under laboratory conditions. However, there is not a single and universally applicable medium for effective isolation, recovery, and cultivation of bifidobacteria, as each growth medium has its own particular advantages and limitations. Besides, the vast majority of these media formulations was not specifically formulated for these microorganisms, and thus information on bifidobacterial cultivation options is scarce while being scattered throughout literature. This chapter intends to serve as a resource summarizing the options to cultivate bifidobacteria that have been described to date, highlighting the main advantages and limitations of each of them.

摘要

自从双歧杆菌被发现以来,它们一直被认为是肠道水平上宿主-微生物界面的基石共生微生物。因此,双歧杆菌作为具有益生菌潜力的微生物源,受到了越来越多的科学和商业关注。然而,由于功能和益生菌特性严格依赖于菌株,因此需要不断分离、培养和表征新的菌株,这需要利用适当的培养基以及强大的分离、培养和保存技术。此外,从自然环境中有效分离双歧杆菌可能需要根据特定的样本材料的特征、竞争菌群的存在、样本中双歧杆菌可能遇到的代谢状态以及适应这种栖息的双歧杆菌物种的特定代谢特征,使用不同的操作和培养介质和条件。文献中已经描述了多种培养介质配方,用于在实验室条件下常规分离和培养双歧杆菌。然而,并没有一种单一的、普遍适用的培养基可以有效地分离、回收和培养双歧杆菌,因为每种生长培养基都有其自身的特定优势和局限性。此外,这些培养基配方中的绝大多数并不是专门为这些微生物设计的,因此关于双歧杆菌培养选择的信息很少,而且分散在文献中。本章旨在作为一个资源,总结迄今为止描述的双歧杆菌培养选择,突出它们各自的主要优点和局限性。

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本文引用的文献

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Evolutionary adaptation in fucosyllactose uptake systems supports bifidobacteria-infant symbiosis.糖基乳糖摄取系统的进化适应支持双歧杆菌-婴儿共生关系。
Sci Adv. 2019 Aug 28;5(8):eaaw7696. doi: 10.1126/sciadv.aaw7696. eCollection 2019 Aug.
2
Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches.采用宏基因组学和培养相结合的方法分离新型肠道双歧杆菌。
Genome Biol. 2019 May 16;20(1):96. doi: 10.1186/s13059-019-1711-6.
3
Utilization of Host-Derived Glycans by Intestinal and Species.肠道微生物对宿主来源聚糖的利用及物种差异。 (注:原英文文本表述似乎不太完整准确,这是尽量贴近原意的翻译)
Front Microbiol. 2024 Mar 1;15:1272062. doi: 10.3389/fmicb.2024.1272062. eCollection 2024.
4
Early-life differences in the gut microbiota composition and functionality of infants at elevated likelihood of developing autism spectrum disorder.婴儿生命早期肠道微生物组成和功能的差异与自闭症谱系障碍发病风险升高有关。
Transl Psychiatry. 2023 Jul 13;13(1):257. doi: 10.1038/s41398-023-02556-6.
5
Fermented natural product targeting gut microbiota regulate immunity and anti-inflammatory activity: A possible way to prevent COVID-19 in daily diet.针对肠道微生物群的发酵天然产物调节免疫和抗炎活性:日常饮食中预防新冠肺炎的一种可能途径。
J Funct Foods. 2022 Oct;97:105229. doi: 10.1016/j.jff.2022.105229. Epub 2022 Aug 22.
6
Spotlight on the Compositional Quality of Probiotic Formulations Marketed Worldwide.全球益生菌制剂产品成分质量聚焦
Front Microbiol. 2021 Jul 20;12:693973. doi: 10.3389/fmicb.2021.693973. eCollection 2021.
Front Microbiol. 2018 Aug 17;9:1917. doi: 10.3389/fmicb.2018.01917. eCollection 2018.
4
Human milk oligosaccharides and infant gut bifidobacteria: Molecular strategies for their utilization.人乳寡糖与婴儿肠道双歧杆菌:利用它们的分子策略。
Food Microbiol. 2018 Oct;75:37-46. doi: 10.1016/j.fm.2017.09.001. Epub 2017 Sep 4.
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Comparative genomics and genotype-phenotype associations in Bifidobacterium breve.短双歧杆菌的比较基因组学和基因型-表型关联。
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Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains.双歧杆菌长双歧杆菌泛基因组中的基因-表型匹配揭示了人类婴儿菌株中碳水化合物代谢的相当大的多样性。
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