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磷酸丙糖异构酶催化作用受扩散控制。附录:通过³¹P NMR分析水溶液中的磷酸丙糖平衡。

Triosephosphate isomerase catalysis is diffusion controlled. Appendix: Analysis of triose phosphate equilibria in aqueous solution by 31P NMR.

作者信息

Blacklow S C, Raines R T, Lim W A, Zamore P D, Knowles J R

机构信息

Department of Chemistry, Harvard University, Cambridge, Massachusetts 02138.

出版信息

Biochemistry. 1988 Feb 23;27(4):1158-67. doi: 10.1021/bi00404a013.

Abstract

The rates of the forward and reverse reactions of triosephosphate isomerase catalyzed by the wild-type and by a sluggish mutant enzyme have been studied in the absence and the presence of several viscosogenic agents. For the mutant enzyme, the kcat for which is some 10(3) times less than that for the wild-type enzyme, the value of kcat/Km with glyceraldehyde phosphate as substrate is almost unaffected by the presence of sucrose or glycerol, even though the concentration of the aldehyde form of the substrate is smaller because of hemiacetal formation. [The nature and relative amounts of the various forms of triose phosphate present in solution (free carbonyl forms, hydrates, dimers, hemiacetal adducts) have been evaluated by 31P NMR and are presented in the Appendix.] The viscosogenic agents cause the substrate to bind more tightly to the enzyme, roughly compensating for the lower substrate concentration. With dihydroxyacetone phosphate as substrate, the values of kcat/Km for the mutant enzyme increase with the addition of viscosogenic agent, consistent with the tighter binding of substrate without (in this case) any concomitant loss due to hemiketal formation. These results for the mutant enzyme (known to be limited in rate by an enolization step in the catalytic mechanism) can be used to interpret the behavior of the wild-type enzyme. Plots of the relative values of kcat/Km for catalysis by the wild-type enzyme (normalized with the corresponding data for the mutant enzyme) against the relative viscosity have slopes close to unity, as predicted by the Stokes-Einstein equation for a cleanly diffusive process. In the presence of polymeric viscosogenic additives such as poly(ethylene glycol), polyacrylamide, or ficoll, no effect on kcat/Km is seen for the wild-type enzyme, consistent with the expectation that molecular diffusion rates are unaffected by the macroviscosity and are only slowed by the presence of smaller agents that raise the microviscosity. These results show that the reaction catalyzed by the wild-type triosephosphate isomerase is limited by the rate at which glyceraldehyde phosphate encounters, or departs from, the active site.

摘要

在存在和不存在几种增粘剂的情况下,研究了野生型和迟缓突变型酶催化的磷酸丙糖异构酶正向和反向反应的速率。对于突变型酶,其kcat比野生型酶小约10³倍,以磷酸甘油醛为底物时,kcat/Km值几乎不受蔗糖或甘油存在的影响,尽管由于半缩醛的形成,底物醛形式的浓度较小。[溶液中存在的各种磷酸丙糖形式(游离羰基形式、水合物、二聚体、半缩醛加合物)的性质和相对含量已通过³¹P NMR评估,并在附录中给出。]增粘剂使底物与酶结合更紧密,大致补偿了较低的底物浓度。以磷酸二羟丙酮为底物时,突变型酶的kcat/Km值随着增粘剂的加入而增加,这与底物结合更紧密一致,在这种情况下没有因半缩酮形成而导致的任何伴随损失。突变型酶的这些结果(已知其催化机制中的烯醇化步骤限制了反应速率)可用于解释野生型酶的行为。野生型酶催化的kcat/Km相对值(用突变型酶的相应数据归一化)与相对粘度的关系图的斜率接近1,正如斯托克斯 - 爱因斯坦方程对纯扩散过程的预测。在存在诸如聚乙二醇、聚丙烯酰胺或聚蔗糖等聚合增粘添加剂的情况下,野生型酶的kcat/Km没有受到影响,这与分子扩散速率不受宏观粘度影响且仅因增加微观粘度的较小试剂的存在而减慢的预期一致。这些结果表明,野生型磷酸丙糖异构酶催化的反应受磷酸甘油醛与活性位点相遇或离开的速率限制。

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