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黄石国家公园狼的疥螨病严重程度与基因组变异减少及选择证据有关。

Sarcoptic mange severity is associated with reduced genomic variation and evidence of selection in Yellowstone National Park wolves ().

作者信息

DeCandia Alexandra L, Schrom Edward C, Brandell Ellen E, Stahler Daniel R, vonHoldt Bridgett M

机构信息

Ecology & Evolutionary Biology Princeton University Princeton NJ USA.

Biology Pennsylvania State University State College PA USA.

出版信息

Evol Appl. 2020 Sep 20;14(2):429-445. doi: 10.1111/eva.13127. eCollection 2021 Feb.

Abstract

Population genetic theory posits that molecular variation buffers against disease risk. Although this "monoculture effect" is well supported in agricultural settings, its applicability to wildlife populations remains in question. In the present study, we examined the genomics underlying individual-level disease severity and population-level consequences of sarcoptic mange infection in a wild population of canids. Using gray wolves () reintroduced to Yellowstone National Park (YNP) as our focal system, we leveraged 25 years of observational data and biobanked blood and tissue to genotype 76,859 loci in over 400 wolves. At the individual level, we reported an inverse relationship between host genomic variation and infection severity. We additionally identified 410 loci significantly associated with mange severity, with annotations related to inflammation, immunity, and skin barrier integrity and disorders. We contextualized results within environmental, demographic, and behavioral variables, and confirmed that genetic variation was predictive of infection severity. At the population level, we reported decreased genome-wide variation since the initial gray wolf reintroduction event and identified evidence of selection acting against alleles associated with mange infection severity. We concluded that genomic variation plays an important role in disease severity in YNP wolves. This role scales from individual to population levels, and includes patterns of genome-wide variation in support of the monoculture effect and specific loci associated with the complex mange phenotype. Results yielded system-specific insights, while also highlighting the relevance of genomic analyses to wildlife disease ecology, evolution, and conservation.

摘要

群体遗传学理论认为,分子变异可缓冲疾病风险。尽管这种“单一栽培效应”在农业环境中得到了充分支持,但其在野生动物种群中的适用性仍存在疑问。在本研究中,我们研究了野生犬科动物种群中疥螨感染的个体疾病严重程度和种群水平后果背后的基因组学。以重新引入黄石国家公园(YNP)的灰狼()作为我们的重点系统,我们利用了25年的观测数据以及生物样本库中的血液和组织,对400多只狼的76,859个基因座进行了基因分型。在个体层面,我们报告了宿主基因组变异与感染严重程度之间的负相关关系。我们还确定了410个与疥螨严重程度显著相关的基因座,其注释与炎症、免疫、皮肤屏障完整性和疾病有关。我们将结果置于环境、人口统计学和行为变量的背景下,并证实基因变异可预测感染严重程度。在种群层面,我们报告了自最初的灰狼重新引入事件以来全基因组变异的减少,并发现了针对与疥螨感染严重程度相关的等位基因的选择证据。我们得出结论,基因组变异在黄石国家公园狼的疾病严重程度中起着重要作用。这一作用从个体层面扩展到种群层面,包括全基因组变异模式以支持单一栽培效应以及与复杂疥螨表型相关的特定基因座。研究结果产生了针对特定系统的见解,同时也突出了基因组分析在野生动物疾病生态学、进化和保护方面的相关性。

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