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商品鹅场鹅及其周边环境中 - 携带与传播情况。

Occurrence and Transmission of -Carrying from Geese and the Surrounding Environment on a Commercial Goose Farm.

机构信息

National Risk Assessment Laboratory for Antimicrobial Resistance of Animal Original Bacteria, South China Agricultural University, Guangzhou, China.

Guangdong Provincial Key Laboratory of Veterinary Pharmaceutics Development and Safety Evaluation, South China Agricultural University, Guangzhou, China.

出版信息

Appl Environ Microbiol. 2021 Apr 27;87(10). doi: 10.1128/AEM.00087-21.

Abstract

We investigated the prevalence and transmission of NDM-producing in fecal samples of geese and environmental samples from a goose farm in southern China. The samples were cultivated on MacConkey agar plates supplemented with meropenem. Individual colonies were examined for , and -positive bacteria were characterized based on whole-genome sequencing (WGS) data from the Illumina and Oxford Nanopore Technologies (ONT) platforms. Of 117 samples analyzed, the carriage rates for New Delhi metallo-β-lactamase (NDM)-positive were 47.1, 18, and 50% in geese, inanimate environments (sewage, soil, fodder, and dust), and mouse samples, respectively. Two variants ( and , in 4 and 40 isolates, respectively) were found among 44 -positive ; these variants belonged to eight species, and was the most prevalent (50%). WGS analysis revealed that coexisted with diverse antibiotic resistance genes (ARGs). Population structure analysis showed that most and sp. isolates were highly heterogeneous, while most sp. and isolates possessed extremely high genetic similarities. In addition, -positive ST4358/ST48 isolates were found to be clonally spread between geese and the environment and were highly genetically similar to those reported from ducks, farm environments, and humans in China. Plasmid analysis indicated that IncX3 pHNYX644-1-like ( = 40) and untypeable pM2-1-like plasmids ( = 4) mediated spread. pM2-1-like plasmids possessed diverse ARGs, including , the arsenical and mercury resistance operons, and the maltose operon. Our findings revealed that the goose farm is a reservoir for NDM-positive The contamination of wild mice and the novel pM2-1-like plasmid described here likely adds to the risk for dissemination of and associated resistance genes. Carbapenem-resistant bacteria, in particular NDM-producing , have become a great threat to global public. These bacteria have been found not only in hospital and community environments but also among food animal production chains, which are recognized as reservoirs for NDM-producing However, the dissemination of NDM-producing bacteria in waterfowl farms has been less well explored. Our study demonstrates that the horizontal spread of -carrying plasmids and the partial clonal spread of -positive contribute to the widespread contamination of in the goose farm ecosystem, including mice. Furthermore, we found a novel and transferable -carrying multidrug resistance (MDR) plasmid that possessed multiple environmental adaptation-related genes. The outcomes of this study contribute to a better understanding of the prevalence and transmission of -carrying among diverse niches in the farm ecosystem.

摘要

我们调查了中国南方一个鹅场的鹅粪便样本和环境样本中携带新德里金属β-内酰胺酶(NDM)的情况。将这些样本接种在添加美罗培南的麦康凯琼脂平板上进行培养。对出现的单个菌落进行检测,对β-内酰胺酶阳性的细菌进行鉴定,并基于 Illumina 和牛津纳米孔技术(ONT)平台的全基因组测序(WGS)数据进行特征分析。在分析的 117 个样本中,鹅、无生命环境(污水、土壤、饲料和灰尘)和鼠样本中携带 NDM 阳性的比例分别为 47.1%、18%和 50%。在 44 株β-内酰胺酶阳性的中发现了两种变体(和,分别在 40 株和 4 株中);这些变体属于 8 个种,最为普遍的是(50%)。WGS 分析显示,携带 NDM 的与多种抗生素耐药基因(ARGs)共存。种群结构分析表明,大多数和 种的分离株高度异质,而大多数 种和 种的分离株具有极高的遗传相似性。此外,在鹅和环境之间发现了携带 NDM 阳性 ST4358/ST48 的克隆传播,并且与中国鸭、农场环境和人类中报道的菌株具有高度的遗传相似性。质粒分析表明,IncX3 pHNYX644-1 样(大小=40)和未定型 pM2-1 样质粒(大小=4)介导了的传播。pM2-1 样质粒携带多种 ARGs,包括、砷和汞耐药操纵子以及麦芽糖操纵子。我们的研究结果表明,鹅场是 NDM 阳性的储存库。野生鼠的污染和本文描述的新型 pM2-1 样质粒可能增加了传播和相关耐药基因的风险。碳青霉烯类耐药菌,尤其是产 NDM 的,对全球公共卫生构成了巨大威胁。这些细菌不仅存在于医院和社区环境中,也存在于食品动物生产链中,这些生产链被认为是产 NDM 的的储存库。然而,水禽养殖场中产 NDM 的的传播情况研究较少。我们的研究表明,携带质粒的水平传播和阳性的部分克隆传播导致鹅场生态系统中广泛存在,包括鼠。此外,我们发现了一种新型的可转移的携带多种药物耐药(MDR)质粒,该质粒具有多种环境适应相关基因。本研究结果有助于更好地了解农场生态系统中不同生态位中携带的流行情况和传播情况。

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