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感染淡水环境中 spp. 的新型裂解性噬菌体的生物多样性

Biodiversity of New Lytic Bacteriophages Infecting spp. in Freshwater Environment.

作者信息

Shahin Khashayar, Barazandeh Mohadeseh, Zhang Lili, Hedayatkhah Abolghasem, He Tao, Bao Hongduo, Mansoorianfar Mojtaba, Pang Maoda, Wang Heye, Wei Ruicheng, Wang Ran

机构信息

Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratory Breeding Base, Jiangsu Academy of Agricultural Sciences, Institute of Food Safety and Nutrition, Nanjing, China.

Curtin Medical School, Curtin University, Perth, WA, Australia.

出版信息

Front Microbiol. 2021 Feb 17;12:619323. doi: 10.3389/fmicb.2021.619323. eCollection 2021.

Abstract

Bacteriophages, viruses that infect and replicate within prokaryotic cells are the most abundant life forms in the environment, yet the vast majority of them have not been properly reported or even discovered. Almost all reported bacteriophages infecting the family, with being the major subject of studies, have been isolated from wastewater, sewage, and effluent resources. In the present study, we focused on the distribution and biodiversity of phages in an aquatic ecosystem. While no bacteria was recovered from the Yangtze River, three lytic phages were isolated from this ecosystem and were subjected to biological, morphological, and genomic characteristics. Comparative genomics and phylogenetic analyses demonstrated that vB _SflM_004 isolate belongs to family, genus of subfamily, vB_SdyM_006 was classified under the same family, however, it is suggested to be in a new genus under subfamily with some other related bacteriophages. vB_SsoS_008 phage belongs to the family, genus, subfamily. The phages did not harbor any genes involved in the lysogenic cycles and showed a high temperature and pH stability. The biodiversity of the isolated phages highly suggests that continued isolation on non-model members of family is necessary to fully understand bacteriophage diversity in aquatic environments.

摘要

噬菌体是感染原核细胞并在其中复制的病毒,是环境中最丰富的生命形式,但绝大多数噬菌体尚未得到妥善报道,甚至未被发现。几乎所有已报道的感染该菌科的噬菌体,其中以某菌为主要研究对象,都是从废水、污水和排放资源中分离出来的。在本研究中,我们聚焦于某噬菌体在水生生态系统中的分布和生物多样性。虽然在长江中未分离到该菌,但从这个生态系统中分离出了三种裂解性噬菌体,并对其进行了生物学、形态学和基因组特征分析。比较基因组学和系统发育分析表明,vB_SflM_004分离株属于某噬菌体科、某亚科的某属,vB_SdyM_006被归类于同一科,但建议与其他一些相关噬菌体一起归入某亚科的一个新属。vB_SsoS_008噬菌体属于某噬菌体科、某属、某亚科。这些噬菌体不含有任何参与溶原周期的基因,并且表现出较高的温度和pH稳定性。分离出的噬菌体的生物多样性强烈表明,持续分离该噬菌体科的非模式成员对于全面了解水生环境中的噬菌体多样性是必要的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db8b/7925395/4b319eb1bbba/fmicb-12-619323-g001.jpg

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