Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA; BEACON Center for the Study of Evolution in Action, Michigan State University, East Lansing, MI, 48824, USA.
Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
Virology. 2019 Dec;538:45-52. doi: 10.1016/j.virol.2019.09.007. Epub 2019 Sep 18.
Bacteriophages are abundant in the environment, yet the vast majority have not been discovered or described. Many characterized bacteriophages infect a small subset of Enterobacteriaceae hosts. Despite its similarity to Escherichia coli, the pathogenic Shigella flexneri has relatively few known phages, which exhibit significant differences from many E. coli phages. This suggests that isolating additional Shigella phages is necessary to further explore these differences. To address questions of novelty and prevalence, high school students isolated bacteriophages on non-pathogenic strains of enteric bacteria. Results indicate that Shigella phages are abundant in the environment and continue to differ significantly from E. coli phages. Our findings suggest that Shigella-infecting members of the Ounavirinae subfamily continue to be over-represented and show surprisingly low diversity within and between sampling sites. Additionally, a podophage with distinct genomic and structural properties suggests that continued isolation on non-model species of bacteria is necessary to truly understand bacteriophage diversity.
噬菌体在环境中大量存在,但绝大多数尚未被发现或描述。许多已鉴定的噬菌体感染一小部分肠杆菌科宿主。尽管与大肠杆菌相似,但致病性福氏志贺菌的已知噬菌体相对较少,与许多大肠杆菌噬菌体有显著差异。这表明有必要分离更多的志贺菌噬菌体来进一步探索这些差异。为了解决新颖性和普遍性的问题,高中生在非致病性肠道细菌上分离噬菌体。结果表明,环境中存在大量的志贺菌噬菌体,并且它们与大肠杆菌噬菌体仍有显著差异。我们的研究结果表明,Ounavirinae 亚科的感染志贺菌的成员继续过度表达,并且在采样点内和之间的多样性都非常低。此外,一种具有独特基因组和结构特性的 Podophage 表明,有必要继续在非模式细菌物种上进行分离,以真正了解噬菌体的多样性。