Zhang Leyi, Pan Jun, Wang Zhen, Yang Chenghui, Huang Jian
Key Laboratory of Tumor Microenvironment and Immune Therapy of Zhejiang Province, Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Cancer Institute (Key Laboratory of Cancer Prevention Intervention, National Ministry of Education), Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Front Genet. 2021 Feb 19;11:580138. doi: 10.3389/fgene.2020.580138. eCollection 2020.
The lung is one of the most common sites of distant metastasis in breast cancer (BC). Identifying ideal biomarkers to construct a more accurate prediction model than conventional clinical parameters is crucial. MicroRNAs (miRNAs) data and clinicopathological data were acquired from the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) database. miR-663, miR-210, miR-17, miR-301a, miR-135b, miR-451, miR-30a, and miR-199a-5p were screened to be highly relevant to lung metastasis (LM) of BC patients. The miRNA-based risk score was developed based on the logistic coefficient of the individual miRNA. Univariate and multivariate logistic regression selected tumor node metastasis (TNM) stage, age at diagnosis, and miRNA-risk score as independent predictive parameters, which were used to construct a nomogram. The Cancer Genome Atlas (TCGA) database was used to validate the signature and nomogram. The predictive performance of the nomogram was compared to that of the TNM stage. The area under the receiver operating characteristics curve (AUC) of the nomogram was higher than that of the TNM stage in all three cohorts (training cohort: 0.774 vs. 0.727; internal validation cohort: 0.763 vs. 0.583; external validation cohort: 0.925 vs. 0.840). The calibration plot of the nomogram showed good agreement between predicted and observed outcomes. The net reclassification improvement (NRI), integrated discrimination improvement (IDI), and decision-curve analysis (DCA) of the nomogram showed that its performances were better than that of the TNM classification system. Functional enrichment analyses suggested several terms with a specific focus on LM. Subgroup analysis showed that miR-30a, miR-135b, and miR-17 have unique roles in lung metastasis of BC. Pan-cancer analysis indicated the significant importance of eight predictive miRNAs in lung metastasis. This study is the first to establish and validate a comprehensive lung metastasis predictive nomogram based on the METABRIC and TCGA databases, which provides a reliable assessment tool for clinicians and aids in appropriate treatment selection.
肺是乳腺癌(BC)远处转移最常见的部位之一。识别理想的生物标志物以构建比传统临床参数更准确的预测模型至关重要。从国际乳腺癌分子分类联盟(METABRIC)数据库中获取了微小RNA(miRNA)数据和临床病理数据。筛选出miR-663、miR-210、miR-17、miR-301a、miR-135b、miR-451、miR-30a和miR-199a-5p与BC患者的肺转移(LM)高度相关。基于个体miRNA的逻辑系数开发了基于miRNA的风险评分。单因素和多因素逻辑回归选择肿瘤淋巴结转移(TNM)分期、诊断年龄和miRNA风险评分作为独立预测参数,用于构建列线图。使用癌症基因组图谱(TCGA)数据库验证该特征和列线图。将列线图的预测性能与TNM分期的预测性能进行比较。在所有三个队列中,列线图的受试者操作特征曲线(AUC)下面积均高于TNM分期(训练队列:0.774对0.727;内部验证队列:0.763对0.583;外部验证队列:0.925对0.840)。列线图的校准图显示预测结果与观察结果之间具有良好的一致性。列线图的净重新分类改善(NRI)、综合辨别改善(IDI)和决策曲线分析(DCA)表明其性能优于TNM分类系统。功能富集分析提示了几个特别关注LM的术语。亚组分析表明,miR-30a、miR-135b和miR-17在BC的肺转移中具有独特作用。泛癌分析表明八种预测性miRNA在肺转移中具有重要意义。本研究首次基于METABRIC和TCGA数据库建立并验证了一个全面的肺转移预测列线图,为临床医生提供了一个可靠的评估工具,并有助于选择合适的治疗方法。