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在皮肤黑色素瘤中鉴定和验证稳健的免疫相关基因特征。

The Identification and Validation of a Robust Immune-Associated Gene Signature in Cutaneous Melanoma.

机构信息

Department of Dermatology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.

Department of Urology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.

出版信息

J Immunol Res. 2021 Feb 19;2021:6686284. doi: 10.1155/2021/6686284. eCollection 2021.


DOI:10.1155/2021/6686284
PMID:33688507
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7911606/
Abstract

BACKGROUND: Cutaneous melanoma is defined as one of the most aggressive skin tumors in the world. An increasing body of evidence suggested an indispensable association between immune-associated gene (IAG) signature and melanoma. This article is aimed at formulating an IAG signature to estimate prognosis of melanoma. METHODS: 434 melanoma patients were extracted from The Cancer Genome Atlas (TCGA) database, and 1811 IAGs were downloaded from the ImmPort database in our retrospective study. The Cox regression analysis and LASSO regression analysis were utilized to establish a prognostic IAG signature. The Kaplan-Meier (KM) survival analysis was performed, and the time-dependent receiver operating characteristic curve (ROC) analysis was further applied to assess the predictive value. Besides, the propensity score algorithm was utilized to balance the confounding clinical factors between the high- and low-risk groups. RESULTS: A total of six prognostic IAGs comprising of INHA, NDRG1, IFITM1, LHB, GBP2, and CCL8 were eventually filtered out. According to the KM survival analysis, the results displayed a shorter overall survival (OS) in the high-risk group compared to the low-risk group. In the multivariate Cox model, the gene signature was testified as a remarkable prognostic factor (HR = 45.423, < 0.001). Additionally, the ROC curve analyses were performed which demonstrated our IAG signature was superior to four known biomarkers mentioned in the study. Moreover, the IAG signature was significantly related to immunotherapy-related biomarkers. CONCLUSION: Our study demonstrated that the six IAG signature played a critical role in the prognosis and immunotherapy of melanoma, which might help clinicians predict patients' survival and provide individualized treatment.

摘要

背景:皮肤黑色素瘤被定义为世界上最具侵袭性的皮肤肿瘤之一。越来越多的证据表明,免疫相关基因(IAG)特征与黑色素瘤之间存在不可分割的关联。本文旨在构建一个 IAG 特征,以评估黑色素瘤的预后。

方法:在我们的回顾性研究中,从癌症基因组图谱(TCGA)数据库中提取了 434 名黑色素瘤患者,并从 ImmPort 数据库中下载了 1811 个 IAG。利用 Cox 回归分析和 LASSO 回归分析构建了预后 IAG 特征。进行 Kaplan-Meier(KM)生存分析,并进一步应用时间依赖性接收器操作特征曲线(ROC)分析来评估预测价值。此外,还利用倾向评分算法在高低风险组之间平衡混杂的临床因素。

结果:最终筛选出包含 INHA、NDRG1、IFITM1、LHB、GBP2 和 CCL8 的 6 个预后 IAG。根据 KM 生存分析,结果显示高危组的总生存期(OS)明显短于低危组。在多变量 Cox 模型中,基因特征被证明是一个显著的预后因素(HR=45.423,<0.001)。此外,进行了 ROC 曲线分析,结果表明我们的 IAG 特征优于研究中提到的 4 个已知生物标志物。此外,IAG 特征与免疫治疗相关的生物标志物显著相关。

结论:本研究表明,这 6 个 IAG 特征在黑色素瘤的预后和免疫治疗中起着关键作用,这可能有助于临床医生预测患者的生存并提供个体化治疗。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8705/7911606/c6de483f46ac/JIR2021-6686284.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8705/7911606/e55ea71ba9b2/JIR2021-6686284.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8705/7911606/f7d11609c00e/JIR2021-6686284.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8705/7911606/1253593d6985/JIR2021-6686284.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8705/7911606/0242fb7a4cd7/JIR2021-6686284.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8705/7911606/c6de483f46ac/JIR2021-6686284.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8705/7911606/e55ea71ba9b2/JIR2021-6686284.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8705/7911606/f7d11609c00e/JIR2021-6686284.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8705/7911606/1253593d6985/JIR2021-6686284.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8705/7911606/0242fb7a4cd7/JIR2021-6686284.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8705/7911606/c6de483f46ac/JIR2021-6686284.005.jpg

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The Identification and Validation of a Robust Immune-Associated Gene Signature in Cutaneous Melanoma.

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引用本文的文献

[1]
Explore the impact of hypoxia-related genes (HRGs) in Cutaneous melanoma.

BMC Med Genomics. 2023-7-8

[2]
Construction and Identification of an NLR-Associated Prognostic Signature Revealing the Heterogeneous Immune Response in Skin Cutaneous Melanoma.

Clin Cosmet Investig Dermatol. 2023-6-26

[3]
Machine learning-based construction of immunogenic cell death-related score for improving prognosis and response to immunotherapy in melanoma.

Aging (Albany NY). 2023-4-6

[4]
Crosstalk of four kinds of cell deaths defines subtypes of cutaneous melanoma for precise immunotherapy and chemotherapy.

Front Immunol. 2022

[5]
What genes are differentially expressed in individuals with schizophrenia? A systematic review.

Mol Psychiatry. 2022-3

[6]
Development and Validation of a CD8+ T Cell Infiltration-Related Signature for Melanoma Patients.

Front Immunol. 2021

本文引用的文献

[1]
Role of Surgery in Stage IV Melanoma.

Surg Oncol Clin N Am. 2020-7

[2]
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J Immunol Res. 2020-3-7

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IFITM1 is a Novel, Highly Sensitive Marker for Endometriotic Stromal Cells in Ovarian and Extragenital Endometriosis.

Reprod Sci. 2019-2-21

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Curr Treat Options Oncol. 2019-1-24

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Nat Rev Drug Discov. 2019-3

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