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秘鲁利马,耐多药结核病的社区传播与活动空间重叠有关。

Community transmission of multidrug-resistant tuberculosis is associated with activity space overlap in Lima, Peru.

机构信息

Department of Epidemiology and Biostatistics, The University of Arizona, Mel and Enid Zuckerman College of Public Health, 1295 N Martin Ave., Tucson, AZ, 85724, USA.

The London School of Hygiene and Tropical Medicine, Keppel Street, London, UK.

出版信息

BMC Infect Dis. 2021 Mar 18;21(1):275. doi: 10.1186/s12879-021-05953-8.

Abstract

BACKGROUND

Transmission of multidrug-resistant tuberculosis (MDRTB) requires spatial proximity between infectious cases and susceptible persons. We assess activity space overlap among MDRTB cases and community controls to identify potential areas of transmission.

METHODS

We enrolled 35 MDRTB cases and 64 TB-free community controls in Lima, Peru. Cases were whole genome sequenced and strain clustering was used as a proxy for transmission. GPS data were gathered from participants over seven days. Kernel density estimation methods were used to construct activity spaces from GPS locations and the utilization distribution overlap index (UDOI) was used to quantify activity space overlap.

RESULTS

Activity spaces of controls (median = 35.6 km, IQR = 25.1-54) were larger than cases (median = 21.3 km, IQR = 17.9-48.6) (P = 0.02). Activity space overlap was greatest among genetically clustered cases (mean UDOI = 0.63, sd = 0.67) and lowest between cases and controls (mean UDOI = 0.13, sd = 0.28). UDOI was positively associated with genetic similarity of MDRTB strains between case pairs (P < 0.001). The odds of two cases being genetically clustered increased by 22% per 0.10 increase in UDOI (OR = 1.22, CI = 1.09-1.36, P < 0.001).

CONCLUSIONS

Activity space overlap is associated with MDRTB clustering. MDRTB transmission may be occurring in small, overlapping activity spaces in community settings. GPS studies may be useful in identifying new areas of MDRTB transmission.

摘要

背景

耐多药结核病(MDRTB)的传播需要感染病例和易感人群之间的空间接近。我们评估了 MDRTB 病例和社区对照者之间的活动空间重叠,以确定潜在的传播区域。

方法

我们在秘鲁利马招募了 35 例 MDRTB 病例和 64 例无结核病的社区对照者。对病例进行全基因组测序,并用菌株聚类作为传播的替代指标。参与者在七天内收集 GPS 数据。使用核密度估计方法从 GPS 位置构建活动空间,并使用利用分布重叠指数(UDOI)量化活动空间重叠。

结果

对照者的活动空间(中位数=35.6km,IQR=25.1-54)大于病例(中位数=21.3km,IQR=17.9-48.6)(P=0.02)。遗传聚类病例之间的活动空间重叠最大(平均 UDOI=0.63,标准差=0.67),病例与对照者之间的活动空间重叠最小(平均 UDOI=0.13,标准差=0.28)。UDOI 与病例对之间 MDRTB 菌株的遗传相似性呈正相关(P<0.001)。每增加 0.10 的 UDOI,两个病例遗传聚类的可能性增加 22%(OR=1.22,CI=1.09-1.36,P<0.001)。

结论

活动空间重叠与 MDRTB 聚类有关。在社区环境中,MDRTB 可能通过小而重叠的活动空间传播。GPS 研究可能有助于确定新的 MDRTB 传播区域。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f07/7977184/0cc9ea3b0c04/12879_2021_5953_Fig1_HTML.jpg

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