Institute for Systems Genetics, NYU Langone Health, New York, NY 10016, USA.
Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, NY 10016, USA.
Genetics. 2021 May 17;218(1). doi: 10.1093/genetics/iyab038.
Design and large-scale synthesis of DNA has been applied to the functional study of viral and microbial genomes. New and expanded technology development is required to unlock the transformative potential of such bottom-up approaches to the study of larger mammalian genomes. Two major challenges include assembling and delivering long DNA sequences. Here, we describe a workflow for de novo DNA assembly and delivery that enables functional evaluation of mammalian genes on the length scale of 100 kilobase pairs (kb). The DNA assembly step is supported by an integrated robotic workcell. We demonstrate assembly of the 101 kb human HPRT1 gene in yeast from 3 kb building blocks, precision delivery of the resulting construct to mouse embryonic stem cells, and subsequent expression of the human protein from its full-length human gene in mouse cells. This workflow provides a framework for mammalian genome writing. We envision utility in producing designer variants of human genes linked to disease and their delivery and functional analysis in cell culture or animal models.
设计和大规模合成 DNA 已被应用于病毒和微生物基因组的功能研究。需要新的和扩展的技术开发来释放这种自下而上的方法在研究更大的哺乳动物基因组方面的变革潜力。两个主要挑战包括组装和输送长 DNA 序列。在这里,我们描述了一种从头开始 DNA 组装和输送的工作流程,该流程可实现长达 100 千碱基对 (kb) 的哺乳动物基因的功能评估。该 DNA 组装步骤得到了集成机器人工作单元的支持。我们展示了从 3 kb 构建块在酵母中组装 101 kb 的人 HPRT1 基因,精确地将构建体递送到小鼠胚胎干细胞,并随后在小鼠细胞中从其全长人基因表达人蛋白。该工作流程为哺乳动物基因组编写提供了一个框架。我们设想在细胞培养或动物模型中生产与疾病相关的人类基因的设计变体及其输送和功能分析方面的应用。