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以 RNA 为中心的蛋白质数据库历史叙事。

An RNA-centric historical narrative around the Protein Data Bank.

机构信息

Institut de Biologie Moléculaire et Cellulaire du CNRS, Architecture et Réactivité de l'ARN, Université de Strasbourg, Strasbourg, France.

Department of Chemistry, Bowling Green State University, Bowling Green, Ohio, USA.

出版信息

J Biol Chem. 2021 Jan-Jun;296:100555. doi: 10.1016/j.jbc.2021.100555. Epub 2021 Mar 18.

Abstract

Some of the amazing contributions brought to the scientific community by the Protein Data Bank (PDB) are described. The focus is on nucleic acid structures with a bias toward RNA. The evolution and key roles in science of the PDB and other structural databases for nucleic acids illustrate how small initial ideas can become huge and indispensable resources with the unflinching willingness of scientists to cooperate globally. The progress in the understanding of the molecular interactions driving RNA architectures followed the rapid increase in RNA structures in the PDB. That increase was consecutive to improvements in chemical synthesis and purification of RNA molecules, as well as in biophysical methods for structure determination and computer technology. The RNA modeling efforts from the early beginnings are also described together with their links to the state of structural knowledge and technological development. Structures of RNA and of its assemblies are physical objects, which, together with genomic data, allow us to integrate present-day biological functions and the historical evolution in all living species on earth.

摘要

描述了蛋白质数据库(PDB)为科学界带来的一些令人惊叹的贡献。重点是具有 RNA 偏向性的核酸结构。PDB 和其他核酸结构数据库的进化及其在科学中的关键作用说明了,只要科学家们有意愿进行全球合作,最初的小想法如何能够成为巨大且不可或缺的资源。随着 PDB 中 RNA 结构的快速增加,人们对驱动 RNA 结构的分子相互作用的理解也取得了进展。这种增加是与 RNA 分子的化学合成和纯化以及用于结构测定的生物物理方法和计算机技术的改进相联系的。还描述了从早期开始的 RNA 建模工作,以及它们与结构知识状态和技术发展的联系。RNA 及其组装体的结构是物理对象,它们与基因组数据一起,使我们能够整合当今生物功能和地球上所有生物的历史进化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f4b/8080527/4363b15e098d/gr1.jpg

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