Laboratoire de Chimie des Processus Biologiques, UMR 8229 CNRS, Collège de France, Sorbonne Universités, 11 Place Marcelin Berthelot, 75231 Paris cedex 05, France.
Department of Microbiology, Stress Adaptation and Metabolism in Enterobacteria Unit, UMR CNRS 2001, Institut Pasteur, 25-28 Rue du Dr Roux, 75015 Paris, France.
Nucleic Acids Res. 2021 Apr 19;49(7):3997-4007. doi: 10.1093/nar/gkab138.
Sulfuration of uridine 34 in the anticodon of tRNAs is conserved in the three domains of life, guaranteeing fidelity of protein translation. In eubacteria, it is catalyzed by MnmA-type enzymes, which were previously concluded not to depend on an iron-sulfur [Fe-S] cluster. However, we report here spectroscopic and iron/sulfur analysis, as well as in vitro catalytic assays and site-directed mutagenesis studies unambiguously showing that MnmA from Escherichia coli can bind a [4Fe-4S] cluster, which is essential for sulfuration of U34-tRNA. We propose that the cluster serves to bind and activate hydrosulfide for nucleophilic attack on the adenylated nucleoside. Intriguingly, we found that E. coli cells retain s2U34 biosynthesis in the ΔiscUA ΔsufABCDSE strain, lacking functional ISC and SUF [Fe-S] cluster assembly machineries, thus suggesting an original and yet undescribed way of maturation of MnmA. Moreover, we report genetic analysis showing the importance of MnmA for sustaining oxidative stress.
在生命的三个领域中,尿苷 34 在 tRNA 反密码子中的硫化作用是保守的,保证了蛋白质翻译的准确性。在真细菌中,它是由 MnmA 型酶催化的,先前的结论是这些酶不依赖于铁硫 [Fe-S] 簇。然而,我们在这里报告了光谱和铁/硫分析,以及体外催化测定和定点突变研究,这些研究明确表明大肠杆菌的 MnmA 可以结合一个 [4Fe-4S] 簇,该簇对于 U34-tRNA 的硫化作用是必需的。我们提出,该簇用于结合和激活氢硫化物,以便对腺苷化核苷进行亲核攻击。有趣的是,我们发现大肠杆菌细胞在缺失功能性 ISC 和 SUF [Fe-S] 簇组装机制的 ΔiscUA ΔsufABCDSE 菌株中保留了 s2U34 的生物合成,这表明了 MnmA 成熟的一种新颖的、尚未被描述的方式。此外,我们报告了遗传分析,表明 MnmA 对于维持氧化应激的重要性。