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基于长链非编码 RNA 特征分析的 COVID-19 患者风险分层。

Risk stratification by long non-coding RNAs profiling in COVID-19 patients.

机构信息

Center for Reproductive Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.

Shanghai Key Laboratory for Assisted Reproduction and Reproductive Genetics, Shanghai, China.

出版信息

J Cell Mol Med. 2021 May;25(10):4753-4764. doi: 10.1111/jcmm.16444. Epub 2021 Mar 23.

DOI:10.1111/jcmm.16444
PMID:33759345
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8107096/
Abstract

Coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has become a global pandemic worldwide. Long non-coding RNAs (lncRNAs) are a subclass of endogenous, non-protein-coding RNA, which lacks an open reading frame and is more than 200 nucleotides in length. However, the functions for lncRNAs in COVID-19 have not been unravelled. The present study aimed at identifying the related lncRNAs based on RNA sequencing of peripheral blood mononuclear cells from patients with SARS-CoV-2 infection as well as health individuals. Overall, 17 severe, 12 non-severe patients and 10 healthy controls were enrolled in this study. Firstly, we reported some altered lncRNAs between severe, non-severe COVID-19 patients and healthy controls. Next, we developed a 7-lncRNA panel with a good differential ability between severe and non-severe COVID-19 patients using least absolute shrinkage and selection operator regression. Finally, we observed that COVID-19 is a heterogeneous disease among which severe COVID-19 patients have two subtypes with similar risk score and immune score based on lncRNA panel using iCluster algorithm. As the roles of lncRNAs in COVID-19 have not yet been fully identified and understood, our analysis should provide valuable resource and information for the future studies.

摘要

新型冠状病毒病 2019(COVID-19),由严重急性呼吸系统综合症冠状病毒 2(SARS-CoV-2)引起,已在全球范围内成为一种全球性大流行病。长链非编码 RNA(lncRNA)是一类内源性、非蛋白编码 RNA,缺乏开放阅读框,长度超过 200 个核苷酸。然而,lncRNA 在 COVID-19 中的功能尚未被揭示。本研究旨在基于 SARS-CoV-2 感染患者和健康个体外周血单个核细胞的 RNA 测序,鉴定相关的 lncRNA。总体而言,本研究纳入了 17 例重症、12 例非重症患者和 10 例健康对照者。首先,我们报道了一些在重症、非重症 COVID-19 患者与健康对照者之间发生改变的 lncRNA。接下来,我们使用最小绝对收缩和选择算子回归开发了一个具有良好区分能力的 7-lncRNA 面板,用于区分重症和非重症 COVID-19 患者。最后,我们观察到 COVID-19 是一种异质性疾病,在使用 iCluster 算法基于 lncRNA 面板的情况下,重症 COVID-19 患者存在两种风险评分和免疫评分相似的亚型。由于 lncRNA 在 COVID-19 中的作用尚未得到充分鉴定和理解,我们的分析应该为未来的研究提供有价值的资源和信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc0d/8107096/15ec1e00815c/JCMM-25-4753-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc0d/8107096/6f9ee6abe3e6/JCMM-25-4753-g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc0d/8107096/15ec1e00815c/JCMM-25-4753-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc0d/8107096/6f9ee6abe3e6/JCMM-25-4753-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc0d/8107096/c0835a43a396/JCMM-25-4753-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc0d/8107096/42baa523a6f2/JCMM-25-4753-g004.jpg
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