Suppr超能文献

具有交联马达的细胞骨架丝的显式和平均场模型的比较。

Comparison of explicit and mean-field models of cytoskeletal filaments with crosslinking motors.

机构信息

Department of Physics, University of Colorado Boulder, Boulder, USA.

Courant Institute, New York University, New York, USA.

出版信息

Eur Phys J E Soft Matter. 2021 Mar 29;44(3):45. doi: 10.1140/epje/s10189-021-00042-9.

Abstract

In cells, cytoskeletal filament networks are responsible for cell movement, growth, and division. Filaments in the cytoskeleton are driven and organized by crosslinking molecular motors. In reconstituted cytoskeletal systems, motor activity is responsible for far-from-equilibrium phenomena such as active stress, self-organized flow, and spontaneous nematic defect generation. How microscopic interactions between motors and filaments lead to larger-scale dynamics remains incompletely understood. To build from motor-filament interactions to predict bulk behavior of cytoskeletal systems, more computationally efficient techniques for modeling motor-filament interactions are needed. Here, we derive a coarse-graining hierarchy of explicit and continuum models for crosslinking motors that bind to and walk on filament pairs. We compare the steady-state motor distribution and motor-induced filament motion for the different models and analyze their computational cost. All three models agree well in the limit of fast motor binding kinetics. Evolving a truncated moment expansion of motor density speeds the computation by [Formula: see text]-[Formula: see text] compared to the explicit or continuous-density simulations, suggesting an approach for more efficient simulation of large networks. These tools facilitate further study of motor-filament networks on micrometer to millimeter length scales.

摘要

在细胞中,细胞骨架丝网络负责细胞的运动、生长和分裂。细胞骨架中的丝由交联分子马达驱动和组织。在重建的细胞骨架系统中,马达活性导致了远离平衡的现象,如主动应力、自组织流动和自发向列缺陷的产生。分子马达和丝状肌动蛋白之间的微观相互作用如何导致细胞骨架系统的大规模动力学仍然不完全清楚。为了从马达-丝状肌动蛋白相互作用构建对细胞骨架系统的整体行为的预测,需要更有效的建模马达-丝状肌动蛋白相互作用的计算技术。在这里,我们推导出一个用于交联马达的显式和连续模型的粗粒化层次结构,这些马达结合并在丝状肌动蛋白对上行走。我们比较了不同模型的稳态马达分布和马达诱导的丝状肌动蛋白运动,并分析了它们的计算成本。所有三种模型在快速马达结合动力学的极限下都能很好地吻合。与显式或连续密度模拟相比,通过截断矩展开马达密度的演化将计算速度提高了[Formula: see text]-[Formula: see text],这表明了一种更有效地模拟大网络的方法。这些工具促进了对微毫米长度尺度上的马达-丝状肌动蛋白网络的进一步研究。

相似文献

4
Nonequilibrium structure and dynamics in a microscopic model of thin-film active gels.薄膜活性凝胶微观模型中的非平衡结构与动力学
Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Mar;89(3):032705. doi: 10.1103/PhysRevE.89.032705. Epub 2014 Mar 10.
7
Length regulation of active biopolymers by molecular motors.分子马达对活性生物聚合物的长度调控。
Phys Rev Lett. 2012 Jun 22;108(25):258103. doi: 10.1103/PhysRevLett.108.258103.

本文引用的文献

1
Self-straining of actively crosslinked microtubule networks.主动交联微管网络的自应变
Nat Phys. 2019 Dec;15(12):1295-1300. doi: 10.1038/s41567-019-0642-1. Epub 2019 Sep 2.
4
SciPy 1.0: fundamental algorithms for scientific computing in Python.SciPy 1.0:Python 中的科学计算基础算法。
Nat Methods. 2020 Mar;17(3):261-272. doi: 10.1038/s41592-019-0686-2. Epub 2020 Feb 3.
6
Self-organizing motors divide active liquid droplets.自组织马达可分裂活跃的液滴。
Proc Natl Acad Sci U S A. 2019 Jun 4;116(23):11125-11130. doi: 10.1073/pnas.1814854116. Epub 2019 May 21.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验