Department of Physics, University of Colorado Boulder, Boulder, USA.
Courant Institute, New York University, New York, USA.
Eur Phys J E Soft Matter. 2021 Mar 29;44(3):45. doi: 10.1140/epje/s10189-021-00042-9.
In cells, cytoskeletal filament networks are responsible for cell movement, growth, and division. Filaments in the cytoskeleton are driven and organized by crosslinking molecular motors. In reconstituted cytoskeletal systems, motor activity is responsible for far-from-equilibrium phenomena such as active stress, self-organized flow, and spontaneous nematic defect generation. How microscopic interactions between motors and filaments lead to larger-scale dynamics remains incompletely understood. To build from motor-filament interactions to predict bulk behavior of cytoskeletal systems, more computationally efficient techniques for modeling motor-filament interactions are needed. Here, we derive a coarse-graining hierarchy of explicit and continuum models for crosslinking motors that bind to and walk on filament pairs. We compare the steady-state motor distribution and motor-induced filament motion for the different models and analyze their computational cost. All three models agree well in the limit of fast motor binding kinetics. Evolving a truncated moment expansion of motor density speeds the computation by [Formula: see text]-[Formula: see text] compared to the explicit or continuous-density simulations, suggesting an approach for more efficient simulation of large networks. These tools facilitate further study of motor-filament networks on micrometer to millimeter length scales.
在细胞中,细胞骨架丝网络负责细胞的运动、生长和分裂。细胞骨架中的丝由交联分子马达驱动和组织。在重建的细胞骨架系统中,马达活性导致了远离平衡的现象,如主动应力、自组织流动和自发向列缺陷的产生。分子马达和丝状肌动蛋白之间的微观相互作用如何导致细胞骨架系统的大规模动力学仍然不完全清楚。为了从马达-丝状肌动蛋白相互作用构建对细胞骨架系统的整体行为的预测,需要更有效的建模马达-丝状肌动蛋白相互作用的计算技术。在这里,我们推导出一个用于交联马达的显式和连续模型的粗粒化层次结构,这些马达结合并在丝状肌动蛋白对上行走。我们比较了不同模型的稳态马达分布和马达诱导的丝状肌动蛋白运动,并分析了它们的计算成本。所有三种模型在快速马达结合动力学的极限下都能很好地吻合。与显式或连续密度模拟相比,通过截断矩展开马达密度的演化将计算速度提高了[Formula: see text]-[Formula: see text],这表明了一种更有效地模拟大网络的方法。这些工具促进了对微毫米长度尺度上的马达-丝状肌动蛋白网络的进一步研究。