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重组人-拟南芥染色体在杂种细胞系中的分子组织。

Molecular organization of recombinant human-Arabidopsis chromosomes in hybrid cell lines.

机构信息

Graduate School of Human Development and Environment, Kobe University, Kobe, Hyogo, 657-8501, Japan.

Centre for Research in Biotechnology for Agriculture, Universiti Malaya, 50603, Lembah Pantai, Kuala Lumpur, Malaysia.

出版信息

Sci Rep. 2021 Mar 30;11(1):7160. doi: 10.1038/s41598-021-86130-4.

Abstract

Although plants and animals are evolutionarily distant, the structure and function of their chromosomes are largely conserved. This allowed the establishment of a human-Arabidopsis hybrid cell line in which a neo-chromosome was formed by insertion of segments of Arabidopsis chromosomes into human chromosome 15. We used this unique system to investigate how the introgressed part of a plant genome was maintained in human genetic background. The analysis of the neo-chromosome in 60- and 300-day-old cell cultures by next-generation sequencing and molecular cytogenetics suggested its origin by fusion of DNA fragments of different sizes from Arabidopsis chromosomes 2, 3, 4, and 5, which were randomly intermingled rather than joined end-to-end. The neo-chromosome harbored Arabidopsis centromeric repeats and terminal human telomeres. Arabidopsis centromere wasn't found to be functional. Most of the introgressed Arabidopsis DNA was eliminated during the culture, and the Arabidopsis genome in 300-day-old culture showed significant variation in copy number as compared with the copy number variation in the 60-day-old culture. Amplified Arabidopsis centromere DNA and satellite repeats were localized at particular loci and some fragments were inserted into various positions of human chromosome. Neo-chromosome reorganization and behavior in somatic cell hybrids between the plant and animal kingdoms are discussed.

摘要

尽管植物和动物在进化上相距甚远,但它们的染色体结构和功能在很大程度上是保守的。这使得我们能够建立一个人类-拟南芥杂种细胞系,在这个细胞系中,通过插入拟南芥染色体的片段到人类染色体 15 上形成了一个新的染色体。我们利用这个独特的系统来研究植物基因组的导入部分如何在人类遗传背景中得以维持。通过下一代测序和分子细胞遗传学对 60 天和 300 天龄细胞培养物中的新染色体进行分析表明,它是由来自拟南芥染色体 2、3、4 和 5 的不同大小的 DNA 片段融合而成的,这些片段是随机混合的,而不是端到端连接的。新染色体携带有拟南芥着丝粒重复序列和末端人类端粒。没有发现拟南芥着丝粒具有功能。在培养过程中,大部分导入的拟南芥 DNA 被消除了,而在 300 天龄的培养物中,与 60 天龄的培养物相比,导入的拟南芥基因组在拷贝数上表现出显著的变化。扩增的拟南芥着丝粒 DNA 和卫星重复序列定位于特定的位置,一些片段插入到人类染色体的各种位置。本文讨论了植物和动物王国的体细胞杂种中新染色体的重组和行为。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0e3/8009911/e1fcb1ed2a30/41598_2021_86130_Fig1_HTML.jpg

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