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一个五甲基胞嘧啶调控基因特征是肺腺癌患者的预后生物标志物。

A five-m6A regulatory gene signature is a prognostic biomarker in lung adenocarcinoma patients.

机构信息

Department of Thoracic Surgery, First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou 310003, China.

出版信息

Aging (Albany NY). 2021 Mar 26;13(7):10034-10057. doi: 10.18632/aging.202761.

Abstract

We analyzed the prognostic value of N6-methyladenosine (m6A) regulatory genes in lung adenocarcinoma (LADC) and their association with tumor immunity and immunotherapy response. Seventeen of 20 m6A regulatory genes were differentially expressed in LDAC tissue samples from the TCGA and GEO databases. We developed a five-m6A regulatory gene prognostic signature based on univariate and Lasso Cox regression analysis. Western blot analysis confirmed that the five prognostic m6A regulatory proteins were highly expressed in LADC tissues. We constructed a nomogram with five-m6A regulatory gene prognostic risk signature and AJCC stages. ROC curves and calibration curves showed that the nomogram was well calibrated and accurately distinguished high-risk and low-risk LADC patients. Weighted gene co-expression analysis showed significant correlation between prognostic risk signature genes and the turquoise module enriched with cell cycle genes. The high-risk LADC patients showed significantly higher PD-L1 levels, increased tumor mutational burden, and a lower proportion of CD8 T cells in the tumor tissues and improved response to immune checkpoint blockade therapy. These findings show that this five-m6A regulatory gene signature is a prognostic biomarker in LADC and that immune checkpoint blockade is a potential therapeutic option for high-risk LADC patients.

摘要

我们分析了 N6-甲基腺苷(m6A)调节基因在肺腺癌(LADC)中的预后价值及其与肿瘤免疫和免疫治疗反应的关系。在 TCGA 和 GEO 数据库的 LADC 组织样本中,有 17 个 m6A 调节基因存在差异表达。我们基于单变量和 Lasso Cox 回归分析建立了一个由五个 m6A 调节基因组成的预后特征。Western blot 分析证实,这五个预后 m6A 调节蛋白在 LADC 组织中高表达。我们构建了一个包含五个 m6A 调节基因预后风险特征和 AJCC 分期的列线图。ROC 曲线和校准曲线表明,该列线图具有良好的校准能力,能够准确区分高危和低危 LADC 患者。加权基因共表达分析显示,预后风险特征基因与富含细胞周期基因的绿松石模块之间存在显著相关性。高危 LADC 患者的肿瘤组织中 PD-L1 水平更高,肿瘤突变负担增加,CD8 T 细胞比例更低,对免疫检查点阻断治疗的反应更好。这些发现表明,该五个 m6A 调节基因特征是 LADC 的预后生物标志物,免疫检查点阻断可能是高危 LADC 患者的潜在治疗选择。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5d8/8064222/3c0709371ccf/aging-13-202761-g001.jpg

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