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Mitogenome of Yang & Yang, 2010 (Diptera: Stratiomyidae) and its phylogenetic implications.

作者信息

Hu Kai, Yang Zaihua

机构信息

Guizhou Academy of Forestry, Guiyang, P. R. China.

出版信息

Mitochondrial DNA B Resour. 2021 Mar 17;6(3):914-915. doi: 10.1080/23802359.2021.1886887.

DOI:10.1080/23802359.2021.1886887
PMID:33796679
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7971276/
Abstract

The complete mitogenome of Yang & Yang, 2010 (Stratiomyidae: Pachygastrinae) successfully sequenced. The mitogenome of is a circular DNA molecule of 16,069 bp in length with 72% AT content, consisting of 13 PCGs, two rRNAs, 22 tRNAs, and a large control region. The gene order is consistent with other dipteran mitogenomes. The phylogenetic tree was reconstructed using maximum likelihood analysis, and the topology revealed that Pachygastrinae is not a monophyletic group.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b821/7971276/c7a92dd94e1e/TMDN_A_1886887_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b821/7971276/c7a92dd94e1e/TMDN_A_1886887_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b821/7971276/c7a92dd94e1e/TMDN_A_1886887_F0001_C.jpg

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本文引用的文献

1
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Mitochondrial DNA B Resour. 2017 Jul 26;2(2):461-462. doi: 10.1080/23802359.2017.1357450.
2
Complete mitochondrial genome of (Scopoli). (Diptera, Coenomyiidae).（斯科波利）的完整线粒体基因组。（双翅目，沼蝇科）
Mitochondrial DNA B Resour. 2020 Jul 9;5(3):2711-2712. doi: 10.1080/23802359.2020.1787889.
3
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization.MitoZ：动物线粒体基因组组装、注释和可视化的工具包。
Nucleic Acids Res. 2019 Jun 20;47(11):e63. doi: 10.1093/nar/gkz173.
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NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty：从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
5
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses.PartitionFinder 2：用于选择分子和形态系统发育分析进化分区模型的新方法。
Mol Biol Evol. 2017 Mar 1;34(3):772-773. doi: 10.1093/molbev/msw260.
6
The Oriental genus Nasimyia (Diptera: Stratiomyidae): Geographical distribution, key to species and descriptions of three new species.
Zootaxa. 2013;3619:526-40. doi: 10.11646/zootaxa.3619.5.2.
7
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.IQ-TREE：一种用于估计最大似然系统发育树的快速且有效的随机算法。
Mol Biol Evol. 2015 Jan;32(1):268-74. doi: 10.1093/molbev/msu300. Epub 2014 Nov 3.
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Ultrafast approximation for phylogenetic bootstrap.快速近似的系统发育自举法。
Mol Biol Evol. 2013 May;30(5):1188-95. doi: 10.1093/molbev/mst024. Epub 2013 Feb 15.
9
The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code.雅库巴果蝇的线粒体DNA分子：核苷酸序列、基因组织和遗传密码。
J Mol Evol. 1985;22(3):252-71. doi: 10.1007/BF02099755.