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针对导致顽固性感染的新型KPP-5裂解噬菌体的特性及全基因组序列分析

Characterization and Full Genome Sequence of Novel KPP-5 Lytic Phage against Responsible for Recalcitrant Infection.

作者信息

Sofy Ahmed R, El-Dougdoug Noha K, Refaey Ehab E, Dawoud Rehab A, Hmed Ahmed A

机构信息

Botany and Microbiology Department, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt.

Botany and Microbiology Department, Faculty of Science, Benha University, Benha 13518, Egypt.

出版信息

Biomedicines. 2021 Mar 28;9(4):342. doi: 10.3390/biomedicines9040342.

Abstract

is a hazardous opportunistic pathogen that is involved in many serious human diseases and is considered to be an important foodborne pathogen found in many food types. Multidrug resistance (MDR) strains have recently spread and increased, making bacteriophage therapy an effective alternative to multiple drug-resistant pathogens. As a consequence, this research was conducted to describe the genome and basic biological characteristics of a novel phage capable of lysing MDR isolated from food samples in Egypt. The host range revealed that KPP-5 phage had potent lytic activity and was able to infect all selected MDR strains from different sources. Electron microscopy images showed that KPP-5 lytic phage was a podovirus morphology. The one-step growth curve exhibited that KPP-5 phage had a relatively short latent period of 25 min, and the burst size was about 236 PFU/infected cells. In addition, KPP-5 phage showed high stability at different temperatures and pH levels. KPP-5 phage has a linear dsDNA genome with a length of 38,245 bp with a GC content of 50.8% and 40 predicted open reading frames (ORFs). Comparative genomics and phylogenetic analyses showed that KPP-5 is most closely associated with the genus in the family. No tRNA genes have been identified in the KPP-5 phage genome. In addition, phage-borne virulence genes or drug resistance genes were not present, suggesting that KPP-5 could be used safely as a phage biocontrol agent.

摘要

是一种危险的机会致病菌,涉及许多严重的人类疾病,被认为是许多食物类型中重要的食源性病原体。多药耐药(MDR)菌株最近传播并增加,使噬菌体疗法成为对抗多重耐药病原体的有效替代方法。因此,本研究旨在描述一种新型噬菌体的基因组和基本生物学特性,该噬菌体能够裂解从埃及食品样本中分离出的MDR。宿主范围显示KPP-5噬菌体具有强大的裂解活性,能够感染来自不同来源的所有选定MDR菌株。电子显微镜图像显示KPP-5裂解噬菌体呈短尾病毒形态。一步生长曲线表明,KPP-5噬菌体的潜伏期相对较短,为25分钟,裂解量约为236 PFU/感染细胞。此外,KPP-5噬菌体在不同温度和pH水平下表现出高稳定性。KPP-5噬菌体具有线性双链DNA基因组,长度为38245 bp,GC含量为50.8%,有40个预测的开放阅读框(ORF)。比较基因组学和系统发育分析表明,KPP-5与该科中的该属关系最为密切。在KPP-5噬菌体基因组中未鉴定到tRNA基因。此外,不存在噬菌体携带的毒力基因或耐药基因,这表明KPP-5可以安全地用作噬菌体生物防治剂。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9844/8066614/abcdade1275f/biomedicines-09-00342-g001.jpg

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