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[6+4]-环加成加合物是链霉糖霉素生物合成中的生物合成中间体。

A [6+4]-cycloaddition adduct is the biosynthetic intermediate in streptoseomycin biosynthesis.

机构信息

State Key Laboratory of Pharmaceutical Biotechnology, Institute of Functional Biomolecules, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Life Sciences, Nanjing University, Nanjing, China.

State Key Laboratory of Coordination Chemistry, Jiangsu Key Laboratory of Advanced Organic Materials, Chemistry and Biomedicine Innovation Center, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China.

出版信息

Nat Commun. 2021 Apr 7;12(1):2092. doi: 10.1038/s41467-021-22395-7.

Abstract

Streptoseomycin (STM, 1) is a bacterial macrolactone that has a unique 5/14/10/6/6-pentacyclic ring with an ether bridge. We have previously identified the biosynthetic gene cluster for 1 and characterized StmD as [6 + 4]- and [4 + 2]-bispericyclase that catalyze a reaction leading to both 6/10/6- and 10/6/6-tricyclic adducts (6 and 7). The remaining steps, especially how to install and stabilize the required 10/6/6-tricyclic core for downstream modifications, remain unknown. In this work, we have identified three oxidoreductases that fix the required 10/6/6-tryciclic core. A pair of flavin-dependent oxidoreductases, StmO1 and StmO2, catalyze the direct hydroxylation at [6 + 4]-adduct (6). Subsequently, a spontaneous [3,3]-Cope rearrangement and an enol-ketone tautomerization result in the formation of 10/6/6-tricyclic intermediate 12b, which can be further converted to a stable 10/6/6-tricyclic alcohol 11 through a ketoreduction by StmK. Crystal structure of the heterodimeric complex NtfO1-NtfO2, homologues of StmO1-StmO2 with equivalent function, reveals protein-protein interactions. Our results demonstrate that the [6 + 4]-adduct instead of [4 + 2]-adduct is the bona fide biosynthetic intermediate.

摘要

链丝菌素(STM,1)是一种具有独特的 5/14/10/6/6-五环并带有醚桥的细菌大环内酯。我们之前已经鉴定了 1 的生物合成基因簇,并将 StmD 鉴定为[6 + 4]-和[4 + 2]-双骈环化酶,它们催化导致 6/10/6-和 10/6/6-三环加合物(6 和 7)的反应。其余步骤,特别是如何安装和稳定所需的 10/6/6-三环核心以进行下游修饰,仍然未知。在这项工作中,我们已经鉴定了三个氧化还原酶,它们可以固定所需的 10/6/6-三环核心。一对黄素依赖的氧化还原酶 StmO1 和 StmO2 催化[6 + 4]-加合物(6)的直接羟化。随后,自发的[3,3]-Cope 重排和烯醇-酮互变异构导致 10/6/6-三环中间产物 12b 的形成,该中间产物可以通过 StmK 进行酮还原进一步转化为稳定的 10/6/6-三环醇 11。与具有等效功能的 StmO1-StmO2 同源的异二聚体复合物 NtfO1-NtfO2 的晶体结构揭示了蛋白质-蛋白质相互作用。我们的结果表明,[6 + 4]-加合物而不是[4 + 2]-加合物是真正的生物合成中间体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6234/8027225/1d1525b1149b/41467_2021_22395_Fig1_HTML.jpg

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