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海生新糠虾(Thalassobius aquimarinus),从日本海海滨分离得到。

Thalassobius aquimarinus sp. nov., isolated from the Sea of Japan seashore.

机构信息

G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch, Russian Academy of Sciences, Prospect 100 Let Vladivostoku, 159, Vladivostok, 690022, Russia.

Zhirmunsky Institute of Marine Biology, Far Eastern Branch, Russian Academy of Sciences, Vladivostok, 690041, Russia.

出版信息

Arch Microbiol. 2021 Aug;203(6):3201-3207. doi: 10.1007/s00203-021-02285-8. Epub 2021 Apr 8.

Abstract

An aerobic, Gram-negative, non-pigmented non-motile bacterium designed КMM 8518 was isolated from a seawater sampled from the Sea of Japan seashore. Strain КMM 8518 grew at 7-42 °C and in the presence of 1-7% NaCl. The phylogenetic analyses based on 16S rRNA gene and whole-genome sequences placed the novel strain КMM 8518 into the genus Thalassobius as a separate lineage. Strain КMM 8518 shared the highest 16S rRNA gene sequence similarity of 98% to Thalassobius gelatinovorus KCTC 22092 and similarity values of ≤ 97% to other recognized Thalassobius species. The average nucleotide identity and digital DNA-DNA hybridization values between strain КMM 8518 and T. gelatinovorus KCTC 22092 were 79.6% and 23.5%, respectively. The major respiratory quinone was ubiquinone-10. The major fatty acid was Cω7c followed by 11-methyl Cω7c. Polar lipids comprised phosphatidylcholine, phosphatidylglycerol, diphosphatidylglycerol, an unidentified aminolipid, an unidentified phospholipid, and three unidentified lipids. The DNA G+C content of 62.7% was calculated from genome sequence analysis. Based on the phylogenetic analyses and distinctive phenotypic characteristics, the marine bacterium КMM 8518 is concluded to represent a novel species of the genus Thalassobius for which the name Thalassobius aquimarinus sp. nov. is proposed. The type strain of the species is strain KMM 8518 (= KCTC 82576).

摘要

从日本海海岸采集的海水中分离到一株好氧、革兰氏阴性、非色素、非运动的细菌,命名为 КMM 8518。菌株 КMM 8518 在 7-42°C 和 1-7%NaCl 的存在下生长。基于 16S rRNA 基因和全基因组序列的系统发育分析将新菌株 КMM 8518 归入 Thalassobius 属,并作为一个独立的谱系。菌株 КMM 8518 与 Thalassobius gelatinovorus KCTC 22092 的 16S rRNA 基因序列相似度最高,为 98%,与其他公认的 Thalassobius 物种的相似度值≤97%。菌株 КMM 8518 与 T. gelatinovorus KCTC 22092 的平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 79.6%和 23.5%。主要呼吸醌为泛醌-10。主要脂肪酸为 Cω7c,其次为 11-甲基 Cω7c。极性脂包括磷脂酰胆碱、磷脂酰甘油、双磷脂酰甘油、一种未鉴定的胺脂、一种未鉴定的磷脂和三种未鉴定的脂类。根据基因组序列分析,DNA G+C 含量为 62.7%。基于系统发育分析和独特的表型特征,该海洋细菌 КMM 8518 被认为代表了 Thalassobius 属的一个新种,建议将其命名为 Thalassobius aquimarinus sp. nov.。该种的模式菌株为 KMM 8518(=KCTC 82576)。

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